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1.0k
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Comment:
C: Accounting for Gene Set Overlaps in Goana and Kegga Results
4.7 years ago
Dario Strbenac
★ 1.5k
2
votes
3
replies
1.0k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 4.7 years ago by
mikhael.manurung
▴ 270 • written 4.7 years ago by
Dario Strbenac
★ 1.5k
5
votes
11
replies
3.9k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils
TCGAbiolinks
GenomicDataCommons
updated 4.8 years ago by
Marcel Ramos
690 • written 4.8 years ago by
Dario Strbenac
★ 1.5k
1
vote
4
replies
3.9k
views
Comment:
C: Matching TCGA Aliquot ID to UUID or Barcode
4.8 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.0k
views
Comment:
C: rbind VCF Two Objects Column Names Error
4.8 years ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
1.0k
views
Answer:
A: How can I overcome the error of "No residual degrees of freedom in linear model
4.8 years ago
Dario Strbenac
★ 1.5k
0
votes
3
replies
1.0k
views
rbind VCF Two Objects Column Names Error
VariantAnnotation
VCF
4.9 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.2k
views
Comment:
C: Mimic Counting of HTSeq-count Using countOverlaps
4.9 years ago
Dario Strbenac
★ 1.5k
4
votes
4
replies
1.2k
views
Mimic Counting of HTSeq-count Using countOverlaps
GenomicAlignments
countOverlaps
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.2k
views
Comment:
C: RNA-seq Statstical Models and Transcriptional Amplification
5.1 years ago
Dario Strbenac
★ 1.5k
3
votes
4
replies
1.2k
views
RNA-seq Statstical Models and Transcriptional Amplification
edgeR
DESeq2
Transcriptional Amplification
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.3k
views
Comment:
C: Paired analysis (tumor vs normal) at three different conditions with EdgeR
5.2 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.1k
views
Comment:
C: qQCReport Missing Plots Described in Documentation
5.2 years ago
Dario Strbenac
★ 1.5k
1
vote
4
replies
1.1k
views
qQCReport Missing Plots Described in Documentation
QuasR
updated 5.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 5.2 years ago by
Dario Strbenac
★ 1.5k
2
votes
0
replies
2.1k
views
Answer:
A: Difference in TCGA RNAseq expression values between GDC harmonized and legacy da
5.4 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
551
views
Comment:
C: How to monitor the performance of MS-based omics data?
5.5 years ago
Dario Strbenac
★ 1.5k
6
votes
4
replies
7.5k
views
Converting UniProt Identifier Into Representative Gene Symbol
UniProt.ws
updated 16 months ago by
Marcel Ramos
690 • written 5.7 years ago by
Dario Strbenac
★ 1.5k
2
votes
1
reply
1.1k
views
Answer:
A: Looking for code showing how estimateDispersions works.
5.7 years ago
Dario Strbenac
★ 1.5k
1
vote
1
reply
894
views
Mean-Variance Plot for Normalised Counts
EDASeq
meanVarPlot
updated 5.9 years ago by
davide risso
▴ 950 • written 5.9 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
824
views
meanVarPlot Ignores Sample Total Count Differences
EDASeq
meanVarPlot
5.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.2k
views
Comment:
C: Non-Redundant Edges in Connected Components
5.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.2k
views
Comment:
C: Non-Redundant Edges in Connected Components
5.9 years ago
Dario Strbenac
★ 1.5k
1
vote
4
replies
1.2k
views
Non-Redundant Edges in Connected Components
RBGL
updated 5.9 years ago by
Hervé Pagès
16k • written 5.9 years ago by
Dario Strbenac
★ 1.5k
1
vote
0
replies
1.1k
views
Answer:
A: Cannot install AUCell 1.2.2
5.9 years ago
Dario Strbenac
★ 1.5k
1
vote
1
reply
922
views
Recommendations for Protein Network Data Structure
AnnotationDbi
Bimap
Interactome
6.0 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
3.3k
views
Comment:
C: featureCounts taking 4-10 hours per BAM file?
6.0 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.8k
views
Comment:
C: How to handle multi-TSS genes in Repitools?
6.1 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.8k
views
Comment:
C: How to handle multi-TSS genes in Repitools?
6.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
890
views
Answer:
A: Splicing analysis with ASpli
6.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.7k
views
Comment:
C: No BAM option in readAligned from the ShortRead package
6.2 years ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
1.7k
views
Answer:
A: No BAM option in readAligned from the ShortRead package
6.2 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.3k
views
Comment:
C: Normalise counts when tumour samples have normal tissue contamination.
6.2 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.0k
views
Answer:
A: RUVnormalize- How to output a corrected expression matrix without negative value
6.3 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.5k
views
Comment:
C: Changing SVM-Kernal in geNetClassifier function
6.5 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.5k
views
Answer:
A: Changing SVM-Kernal in geNetClassifier function
6.5 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.4k
views
Comment:
C: Differential gene expression of longitudinal data
6.5 years ago
Dario Strbenac
★ 1.5k
8
votes
3
replies
1.6k
views
Reproducibility of MultiDataSet Comparison
MultiDataSet
MultiAssayExperiment
updated 6.7 years ago by
Levi Waldron
★ 1.1k • written 6.7 years ago by
Dario Strbenac
★ 1.5k
2
votes
0
replies
1.1k
views
Comment:
C: Why does total unique map not equal to library size?
6.7 years ago
Dario Strbenac
★ 1.5k
1
vote
1
reply
2.4k
views
Comment:
C: how to extract read alignments from reads aligning in mulitple locations
6.8 years ago
Dario Strbenac
★ 1.5k
3
votes
1
reply
2.4k
views
Answer:
A: how to extract read alignments from reads aligning in mulitple locations
6.8 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
890
views
Vertically Flipped Sashimi Plot
Gviz
Sashimi Plot
6.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.6k
views
Answer:
A: How to get treatment information with TCGAbiolinks?
6.9 years ago
Dario Strbenac
★ 1.5k
1
vote
7
replies
2.5k
views
Mapping Probes to a Genome
BSgenome
biostrings
probe mapping
updated 7.0 years ago by
holgerbrandl
▴ 10 • written 7.7 years ago by
Dario Strbenac
★ 1.5k
1
vote
1
reply
1.0k
views
Most Efficient Application of Voom to Regularly Increasing Study
limma
voom
Batch Effect Correction
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
Dario Strbenac
★ 1.5k
4
votes
3
replies
1.2k
views
plotMDS Input Feature Filtering
edgeR
Exploratory Data Analysis
updated 7.1 years ago by
Gordon Smyth
50k • written 7.1 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.2k
views
Comment:
C: plotMDS Input Feature Filtering
7.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
10.0k
views
Comment:
C: threshold to filter lowly expressed genes
7.1 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
10.0k
views
Comment:
C: threshold to filter lowly expressed genes
7.1 years ago
Dario Strbenac
★ 1.5k
1
vote
0
replies
3.0k
views
Comment:
C: Importing Gene Symbols with makeTxDbFromGFF
7.1 years ago
Dario Strbenac
★ 1.5k
9
votes
3
replies
3.0k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
Dario Strbenac
★ 1.5k
269 results • Page
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