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GFF3
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2.4k
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
5.8 years ago
Raito92
▴ 60
2
votes
2
replies
2.8k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 6.4 years ago by
Michael Lawrence
★ 11k • written 6.4 years ago by
mictadlo
▴ 10
0
votes
0
replies
1.5k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
8.1 years ago
linuxborg2
• 0
2
votes
2
replies
5.5k
views
How to prepare TxDb object using makeTxDbFromGFF with polycistronic transcripts?
txdb
gff3
polycistronic transcript
8.3 years ago
Piotr Gawronski
• 0
9
votes
3
replies
4.2k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 8.9 years ago by
Valerie Obenchain
★ 6.8k • written 8.9 years ago by
Dario Strbenac
★ 1.6k
2
votes
0
replies
4.7k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
10.5 years ago
Sonali Arora
▴ 390
6 results • Page
1 of 1
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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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