Bioconductor GFF3

Showing : GFF3 • reset

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dexseq python gtf gff3 annotation

5.7 years ago Raito92 ▴ 60

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2.8k

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annotation gff3 gff genome

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by mictadlo ▴ 10

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parclip bedtools bed files gff3

8.0 years ago linuxborg2 • 0

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txdb gff3 polycistronic transcript

8.2 years ago Piotr Gawronski • 0

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4.1k

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GenomicFeatures GFF3

updated 8.8 years ago by Valerie Obenchain ★ 6.8k • written 8.8 years ago by Dario Strbenac ★ 1.6k

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4.6k

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AnnotationHub Gencode GFF3 FASTA News

10.4 years ago Sonali Arora ▴ 390

6 results • Page 1 of 1

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Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner • 0

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Votes

C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results

A: Conversion from counts to FPKM

Answer: Incosistencies in buildSNNGraph() function

Answer: Where do the filename come from in the LOLA datasets?

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Great Question to fl ▴ 20

Popular Question to Lluís Revilla Sancho ▴ 760