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3
votes
8
replies
2.3k
views
How DiffBind run PCA based on peak data?
DiffBind
updated 3.5 years ago by ★ 5.2k • written 6.6 years ago by ▴ 20
0
votes
0
replies
2.0k
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Comment: C: How to produce the fraction of reads in peaks (FRiP) using DiffBind
5.1 years ago Gary ▴ 20
0
votes
1
reply
2.0k
views
Comment: C: How to produce the fraction of reads in peaks (FRiP) using DiffBind
5.1 years ago Gary ▴ 20
0
votes
4
replies
2.0k
views
How to produce the fraction of reads in peaks (FRiP) using DiffBind
DiffBind FRiP ATAC-Seq dba.show dba.count
updated 5.1 years ago by ★ 5.2k • written 5.1 years ago by ▴ 20
0
votes
0
replies
765
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.1 years ago Gary ▴ 20
0
votes
1
reply
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.1 years ago Gary ▴ 20
0
votes
0
replies
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
0
replies
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
1
reply
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
0
replies
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
1
reply
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
1
reply
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
1
reply
1.5k
views
Comment: C: The meaning of results produced by the bamQC function implemented in the ATACseq
5.2 years ago Gary ▴ 20
2
votes
5
replies
1.5k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
0
votes
1
reply
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: The meaning of results produced by the bamQC function implemented in the ATACseq
5.2 years ago Gary ▴ 20
0
votes
2
replies
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
0
votes
2
replies
5.0k
views
Comment: C: How about our ATAC-Seq data quality analyzed by ATACseqQC
5.2 years ago Gary ▴ 20
11
votes
21
replies
5.0k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: The optimal minMQS parameter in featureCounts for RNA-Seq quantification
5.2 years ago Gary ▴ 20
3
votes
2
replies
2.1k
views
The optimal minMQS parameter in featureCounts for RNA-Seq quantification
RNA-Seq featureCounts STAR minMQS mapping quality score
updated 5.2 years ago by 50k • written 5.2 years ago by ▴ 20
1
vote
1
reply
848
views
How to color different column bars independently using dba.plotHeatmap (DiffBind)?
diffbind dba.plotHeatmap
updated 5.5 years ago by ★ 5.2k • written 5.5 years ago by ▴ 20
0
votes
1
reply
6.4k
views
Comment: C: Package is not available for R version 3.5.0
5.8 years ago Gary ▴ 20
2
votes
3
replies
6.4k
views
Package is not available for R version 3.5.0
qvalue NBPSeq
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 20
0
votes
0
replies
1.6k
views
Comment: C: How to change sample names in featureCounts or edgeR
5.9 years ago Gary ▴ 20
1
vote
2
replies
1.6k
views
How to change sample names in featureCounts or edgeR
featurecounts edgeR
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 20
0
votes
0
replies
1.4k
views
Comment: C: How edgeR reads an R List object produced by featureCounts
5.9 years ago Gary ▴ 20
2
votes
3
replies
1.4k
views
How edgeR reads an R List object produced by featureCounts
edger featurecounts
updated 13 months ago by 50k • written 5.9 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 6.6 years ago by ▴ 420 • written 6.6 years ago by ▴ 20
0
votes
0
replies
4.7k
views
Comment: C: Could not find function "makeTranscriptDbFromGFF"
6.6 years ago Gary ▴ 20
0
votes
1
reply
1.5k
views
Comment: C: Principal component analysis produced by DiffBind, but PC1 with smaller variatio
6.6 years ago Gary ▴ 20
2
votes
2
replies
4.7k
views
Could not find function "makeTranscriptDbFromGFF"
GenomicFeatures makeTranscriptDbFromGFF gff annotation
updated 6.6 years ago by ★ 11k • written 6.6 years ago by ▴ 20
2
votes
3
replies
1.5k
views
Principal component analysis produced by DiffBind, but PC1 with smaller variation than PC2
diffbind PCA
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by ▴ 20
0
votes
0
replies
2.3k
views
Comment: C: How DiffBind run PCA based on peak data?
6.6 years ago Gary ▴ 20
0
votes
0
replies
2.3k
views
Comment: C: How DiffBind run PCA based on peak data?
6.6 years ago Gary ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: There is no dba.plotVolcano function in DiffBind and how to upgrade DiffBind to
6.6 years ago Gary ▴ 20
3
votes
5
replies
1.8k
views
There is no dba.plotVolcano function in DiffBind and how to upgrade DiffBind to version 2.4.8
diffbind
updated 6.6 years ago by ★ 5.2k • written 6.7 years ago by ▴ 20
1
vote
2
replies
1.2k
views
DiffBind dba.plotHeatmap Error in hclustfun(distfun(x))
diffbind
updated 6.6 years ago by ★ 5.2k • written 6.7 years ago by ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: There is no dba.plotVolcano function in DiffBind and how to upgrade DiffBind to
6.6 years ago Gary ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: There is no dba.plotVolcano function in DiffBind and how to upgrade DiffBind to
6.7 years ago Gary ▴ 20
0
votes
0
replies
1.3k
views
Comment: C: How to set DiffBind dba.plotHeatmap colSideCols option
6.7 years ago Gary ▴ 20
1
vote
2
replies
1.3k
views
How to set DiffBind dba.plotHeatmap colSideCols option
diffbind
updated 6.7 years ago by ★ 5.2k • written 6.7 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Comment: C: The descriptions of score methods in DiffBind
7.3 years ago Gary ▴ 20
1
vote
2
replies
1.2k
views
The descriptions of score methods in DiffBind
DiffBind dba.count score manual PDF
updated 7.4 years ago by ★ 5.2k • written 7.4 years ago by ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: How to scale circle sizes in VennDiagram using draw.triple.venn
7.4 years ago Gary ▴ 20
1
vote
2
replies
1.8k
views
How to scale circle sizes in VennDiagram using draw.triple.venn
VennDiagram venn diagram circle size draw.triple.venn
updated 7.4 years ago by 65k • written 7.4 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Comment: C: How can I set custom colors in DiffBind using dba.plotHeatmap
7.4 years ago Gary ▴ 20
1
vote
2
replies
1.2k
views
How can I set custom colors in DiffBind using dba.plotHeatmap
diffbind color
updated 7.4 years ago by ▴ 650 • written 7.4 years ago by ▴ 20
1
vote
2
replies
1.0k
views
dupRadar parameter for single-end RNA-Seq data
dupRadar
updated 7.5 years ago by ▴ 80 • written 8.0 years ago by ▴ 20
0
votes
0
replies
814
views
Comment: C: About DiffBind dba.counts
7.7 years ago Gary ▴ 20
64 results • Page 1 of 2
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