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color
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reset
0
votes
0
replies
655
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
3.0 years ago
ginlucks
• 0
0
votes
3
replies
1.4k
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind
plot
color
updated 4.2 years ago by
Rory Stark
★ 5.1k • written 4.4 years ago by
melnuesch
▴ 10
0
votes
4
replies
6.8k
views
Limma Volcano Plot Highlight Top Genes by Color
limma
microarray
volcanoplot
color
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
dmm204
• 0
0
votes
2
replies
1.8k
views
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq
color
ggplot2
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
sarahmacdonald86
• 0
1
vote
2
replies
1.1k
views
How can I set custom colors in DiffBind using dba.plotHeatmap
diffbind
color
updated 7.3 years ago by
Gord Brown
▴ 650 • written 7.3 years ago by
Gary
▴ 20
0
votes
1
reply
1.2k
views
HowTo? Provide a different fill color for each rectangle in an Gviz AnnotationTrack ?
Gviz
color
updated 7.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.6 years ago by
Malcolm Cook
★ 1.6k
0
votes
0
replies
959
views
Mixed up colors in GViz GeneRegionTrack
color
GeneRegionTrack
7.8 years ago
senanu.pearson
• 0
4
votes
2
replies
4.1k
views
DESeq2 color coding
DESeq2
color
R package
updated 7.9 years ago by
Mike Smith
★ 6.5k • written 7.9 years ago by
ChIP-Tease
• 0
2
votes
3
replies
2.2k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.2 years ago by
aaron
▴ 10 • written 8.2 years ago by
timothypyork
• 0
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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