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Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
9 months ago • updated 54 minutes ago
Daniel E. Weeks
▴ 20
1
vote
4
replies
698
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How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray
Preprocessing
NimbleGen
Normalization
written 10 months ago by
Sarah
• 0
0
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1
reply
24
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Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 hours ago by
Michael Love
40k • written 7 hours ago by
sara.jacobson
• 0
2
votes
5
replies
49
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Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 5 hours ago by
James W. MacDonald
63k • written 7 hours ago by
nromerov
• 0
0
votes
4
replies
30
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Extract LRT results for each comparison
LRT
DESeq2
updated 7 hours ago by
ATpoint
★ 3.4k • written 8 hours ago by
Yijing
• 0
0
votes
2
replies
34
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bug in block.plsda from mixOmics?
mixOmics
13 hours ago • updated 7 hours ago
Lluís Revilla Sancho
▴ 720
0
votes
3
replies
523
views
Interpretation of LRT results
DESeq2
LRT
Heatmap
updated 8 hours ago by
James W. MacDonald
63k • written 11 months ago by
Laia
▴ 10
7 results • Page
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Answer: Gviz: UcscTrack and "GC Percent" information
by
Daniel E. Weeks
▴ 20
**Answer** In https://github.com/ivanek/Gviz/issues/71 an update that fixes this issue was documented - there it is stated that "…
Comment: Biostrings error at retrieving protein sequences
by
James W. MacDonald
63k
It depends on what kind of whitespace it is. If the whitespace is just a space, then it will work. But if it's a tab, it won't. ``` > gsub…
Comment: Biostrings error at retrieving protein sequences
by
nromerov
• 0
If i write it like ```r gsub(" .*", "", names(protein_sequences)) ``` it will delet all the extra information if it is on the AAString…
Comment: bug in block.plsda from mixOmics?
by
Lluís Revilla Sancho
▴ 720
Oh, sorry for the noise, I see that just after Bioconductor 3.16 the bug is fixed in both 3.17 and in devel. Thanks for checking.
Answer: Mixed up sample info with plotPCA
by
Michael Love
40k
I can already tell there is code you aren't showing. For example, your `pcaData` has a variable 'group' that isn't in the previous sample i…
Votes
Answer: Mouse to Human Genes using bioconductor
Mouse to Human Genes using bioconductor
Answer: Biostrings error at retrieving protein sequences
Answer: Biostrings error at retrieving protein sequences
Answer: How do I merge a list of GRanges?
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