Bioconductor Forum

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886

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Gviz coMET

9 months ago • updated 54 minutes ago Daniel E. Weeks ▴ 20

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698

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Microarray Preprocessing NimbleGen Normalization

written 10 months ago by Sarah • 0

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plotMA ggplot2 plotPCA DESeq2

updated 7 hours ago by Michael Love 40k • written 7 hours ago by sara.jacobson • 0

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 5 hours ago by James W. MacDonald 63k • written 7 hours ago by nromerov • 0

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LRT DESeq2

updated 7 hours ago by ATpoint ★ 3.4k • written 8 hours ago by Yijing • 0

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mixOmics

13 hours ago • updated 7 hours ago Lluís Revilla Sancho ▴ 720

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523

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DESeq2 LRT Heatmap

updated 8 hours ago by James W. MacDonald 63k • written 11 months ago by Laia ▴ 10

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Answer: Gviz: UcscTrack and "GC Percent" information by Daniel E. Weeks ▴ 20

**Answer** In https://github.com/ivanek/Gviz/issues/71 an update that fixes this issue was documented - there it is stated that "…

Comment: Biostrings error at retrieving protein sequences by James W. MacDonald 63k

It depends on what kind of whitespace it is. If the whitespace is just a space, then it will work. But if it's a tab, it won't. ``` > gsub…

Comment: Biostrings error at retrieving protein sequences by nromerov • 0

If i write it like ```r gsub(" .*", "", names(protein_sequences)) ``` it will delet all the extra information if it is on the AAString…

Comment: bug in block.plsda from mixOmics? by Lluís Revilla Sancho ▴ 720

Oh, sorry for the noise, I see that just after Bioconductor 3.16 the bug is fixed in both 3.17 and in devel. Thanks for checking.

Answer: Mixed up sample info with plotPCA by Michael Love 40k

I can already tell there is code you aren't showing. For example, your `pcaData` has a variable 'group' that isn't in the previous sample i…

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Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

Answer: Biostrings error at retrieving protein sequences

Answer: How do I merge a list of GRanges?

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