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13
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Different summary() and results() values in DeSeq2
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updated 21 minutes ago by ▴ 540 • written 1 hour ago by • 0
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15 hours ago Rihards Saksis • 0
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updated 1 day ago by 13k • written 1 day ago by • 0
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130
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104
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3
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AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
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updated 3 days ago by • 0 • written 3 days ago by ▴ 10
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47
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DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the library type when I using DESeq() function if I already using featur…
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4 days ago liuchangbio ▴ 10
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updated 4 days ago by 39k • written 5 days ago by • 0
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6 days ago Lenny186 • 0
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7 days ago • updated 6 days ago me-nobody • 0
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6 days ago salvocomplicazioni1 • 0
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95
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on which data type limma::removeBatchEffect can be applyed?
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0
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1
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60
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In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 4 days ago by ▴ 50 • written 7 days ago by • 0
0
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GOplots::GOChord with heatmaps?
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7 days ago adrija.kalvisa • 0
217 results • Page 1 of 5
Recent ...
Replies
Comment: Combat and dds Object by shaimaa • 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Comment: Atena package - error (new user) by beatriz.calvo ▴ 30
Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …
Answer: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k
You cannot use `mas5calls` on a miRNA-4_0 array. There are no MM probes on that array, so it is not possible to get MAS-5.0 calls, because …
Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0
As mentioned before, this answer did not help me.
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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