Bioconductor Forum

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limma

2 days ago • updated 19 hours ago Anna • 0

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145

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BatchQC batchinDeseq2. columnsincolData.

2 days ago • updated 20 hours ago Galina • 0

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org.Rn.eg.db biomaRt

updated just now by blackwidowzzz • 0 • written 13 hours ago by landenshanie ▴ 40

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554

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DESeq2

3 days ago • updated 17 hours ago Ken C • 0

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apeglm

updated 16 hours ago by Michael Love 42k • written 1 day ago by euge.eugenio ▴ 20

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178

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DESeq2 PCAplot RNA-Seq DesignModel

updated 16 hours ago by Michael Love 42k • written 3 days ago by shaunpeterson • 0

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DESeq2

updated 13 hours ago by James W. MacDonald 66k • written 1 day ago by boczniak767 ▴ 720

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BatchQC BatchEffect rnaseqGene Normalization

updated 18 hours ago by James W. MacDonald 66k • written 1 day ago by Đình Vinh • 0

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125

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BatchQC BatchEffect RNASeq

updated 18 hours ago by James W. MacDonald 66k • written 1 day ago by ttt • 0

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affy

updated 17 hours ago by James W. MacDonald 66k • written 2 days ago by pickingastar • 0

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StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting

18 hours ago pierre.devillemereuil • 0

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curl microRNA starBase webapi ENCORI

updated 23 hours ago by ATpoint ★ 4.1k • written 1 day ago by V_Vibes • 0

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733

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ENmix IlluminaHumanMethylationEPICmanifest

updated 13 hours ago by James W. MacDonald 66k • written 2.0 years ago by Daphna • 0

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AnnotationHub ExperimentHub

9 hours ago Tim Barry • 0

14 results • Page 1 of 1

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

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Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

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