Bioconductor Forum

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 11 minutes ago by Daniele • 0 • written 5.5 years ago by Guido Hooiveld ★ 4.0k

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DESeq2

updated 21 minutes ago by swbarnes2 ★ 1.4k • written 12 hours ago by Ken C • 0

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DESeq2 PCAplot RNA-Seq DesignModel

6 hours ago • updated 5 hours ago shaunpeterson • 0

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STRINGdb

updated 7 hours ago by damian.szk ▴ 80 • written 10 hours ago by ninidea • 0

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masigpro clustering

updated 7 hours ago by anne-laure • 0 • written 7.9 years ago by ls299 • 0

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biomaRt minoralleledata grch38 getBM

14 hours ago • updated 13 hours ago Jeremy.Clark • 0

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195

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org.vdahlaie.eg.db Bioconductor

2 days ago • updated 14 hours ago Patadù ▴ 10

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1.2k

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Europe Conference EuroBioC Events News

updated 14 hours ago by angelaesper43 • 0 • written 19 months ago by Maria Doyle ▴ 70

8 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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