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DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
5 hours ago
shaunpeterson
• 0
0
votes
3
replies
65
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STRINGdb : error with string_db$plot_network()
STRINGdb
updated 6 hours ago by
damian.szk
▴ 80 • written 9 hours ago by
ninidea
• 0
0
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1
reply
27
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Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
updated just now by
swbarnes2
★ 1.4k • written 12 hours ago by
Ken C
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0
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0
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Minor alleles giving NA from R biomart getBM?
biomaRt
minoralleledata
grch38
getBM
14 hours ago • updated 13 hours ago
Jeremy.Clark
• 0
2
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5
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195
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Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
2 days ago • updated 13 hours ago
Patadù
▴ 10
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4
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News:
European Bioconductor Conference 2023 planning
Europe
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EuroBioC
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updated 14 hours ago by
angelaesper43
• 0 • written 19 months ago by
Maria Doyle
▴ 70
7
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38
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5.7k
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Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 16 hours ago by
Johannes Rainer
★ 2.0k • written 5.5 years ago by
Guido Hooiveld
★ 4.0k
0
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3
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2.1k
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maSigPro genes from clusters
masigpro
clustering
updated 7 hours ago by
anne-laure
• 0 • written 7.9 years ago by
ls299
• 0
8 results • Page
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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