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15
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Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
8 hours ago
Tim Barry
• 0
0
votes
1
reply
37
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
updated 11 hours ago by
James W. MacDonald
66k • written 12 hours ago by
landenshanie
▴ 40
0
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0
replies
12
views
Job:
Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod
Evolution
QuantitativeTrailLocus
Genetics
JobPosting
17 hours ago
pierre.devillemereuil
• 0
0
votes
1
reply
39
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ENCORI or starBase : ceRNA data retrieval using Web API and curl
curl
microRNA
starBase
webapi
ENCORI
updated 21 hours ago by
ATpoint
★ 4.1k • written 22 hours ago by
V_Vibes
• 0
1
vote
1
reply
52
views
Control group between 2 batches have different expression in RNAseq data
BatchQC
BatchEffect
rnaseqGene
Normalization
updated 17 hours ago by
James W. MacDonald
66k • written 23 hours ago by
Đình Vinh
• 0
0
votes
0
replies
12
views
Spam:
Understanding Laser Hair Removal?
healthyControlsPresenceChecker
23 hours ago
shahrozimmac
0
1
vote
1
reply
80
views
How to remove batch effect to combine RNAseq data from 2 different experiments?
BatchQC
BatchEffect
RNASeq
updated 17 hours ago by
James W. MacDonald
66k • written 1 day ago by
ttt
• 0
1
vote
3
replies
94
views
LRT, more than two conditions and pairwise comparisons
DESeq2
updated 12 hours ago by
James W. MacDonald
66k • written 1 day ago by
boczniak767
▴ 720
0
votes
2
replies
62
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How to run allelic imbalance in apeglm
apeglm
updated 15 hours ago by
Michael Love
42k • written 1 day ago by
euge.eugenio
▴ 20
0
votes
5
replies
144
views
all variables in design formula must be columns in colData (Deseq2) error
BatchQC
batchinDeseq2.
columnsincolData.
1 day ago • updated 19 hours ago
Galina
• 0
1
vote
2
replies
95
views
Subsetting RNAseq data | voomaByGroup()
limma
2 days ago • updated 17 hours ago
Anna
• 0
0
votes
1
reply
61
views
ERROR; return code from pthread_create() is 22
affy
updated 16 hours ago by
James W. MacDonald
66k • written 2 days ago by
pickingastar
• 0
2
votes
4
replies
177
views
DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
updated 14 hours ago by
Michael Love
42k • written 3 days ago by
shaunpeterson
• 0
0
votes
6
replies
554
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
3 days ago • updated 15 hours ago
Ken C
• 0
0
votes
2
replies
732
views
Help with ENmix readidat
ENmix
IlluminaHumanMethylationEPICmanifest
updated 12 hours ago by
James W. MacDonald
66k • written 2.0 years ago by
Daphna
• 0
15 results • Page
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Replies
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
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