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Creation
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Views
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0
votes
0
replies
1.2k
views
SNP ID mapping with Oligo package
SNP
SNP
11.6 years ago
Guest User
★ 13k
0
votes
0
replies
1.7k
views
PostDoc opportunity
Pathways
Network
Pathways
Network
11.6 years ago
Guest User
★ 13k
0
votes
4
replies
1.3k
views
BioC AMI --instance type
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.6 years ago by
Rohmatul Fajriyah
▴ 190
0
votes
1
reply
2.2k
views
Warning message while trying to install Bioconductor
updated 11.6 years ago by
Steve Lianoglou
★ 13k • written 11.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
loading/accessing older GO.db and org.Hs.eg.db data
Annotation
GO
AnnotationDbi
Annotation
GO
AnnotationDbi
updated 11.6 years ago by
Marc Carlson
★ 7.2k • written 11.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics
arrayQualityMetrics
11.6 years ago
Wolfgang Huber
★ 13k
0
votes
6
replies
1.5k
views
Cannot Install ���VariantTools��� Package on Mac
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.6 years ago by
Guest User
★ 13k
0
votes
2
replies
3.0k
views
Replacing GRanges mcol makes it inaccessible
updated 11.6 years ago by
Michael Lawrence
★ 11k • written 11.6 years ago by
Shraddha Pai
▴ 80
0
votes
1
reply
2.9k
views
DataFrame(..., check.names=F); colnames change when assign data using '[[', not when using '[,]'
ASSIGN
ASSIGN
updated 11.6 years ago by
Michael Lawrence
★ 11k • written 11.6 years ago by
Ludo Pagie
▴ 40
0
votes
0
replies
1.2k
views
question about how to understand exon usage coefficient value
DEXSeq
DEXSeq
11.6 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.1k
views
HTqPCR bug in geometric mean normalization
Normalization
Cancer
Normalization
Cancer
11.6 years ago
Johannes Rainer
▴ 80
0
votes
0
replies
919
views
Bioc 2014: reduced hotel rates
Cancer
Cancer
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
Pathview plot split by experiment condition
gage
pathview
gage
pathview
11.6 years ago
Luo Weijun
★ 1.6k
0
votes
9
replies
4.4k
views
DESeq vs DESeq2 have different DEGs results
DESeq
DESeq2
DESeq
DESeq2
11.6 years ago
Catalina Aguilar Hurtado
▴ 90
0
votes
2
replies
2.6k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics
GO
Regression
Cancer
TranscriptDb
Genetics
GO
Regression
Cancer
TranscriptDb
updated 11.6 years ago by
Tarca, Adi
▴ 570 • written 11.6 years ago by
Hervé Pagès
16k
0
votes
6
replies
1.5k
views
VCF class: different length when unlisting INFO CompressedCharacterList
Cancer
Cancer
updated 11.6 years ago by
Michael Lawrence
★ 11k • written 11.6 years ago by
Sigve Nakken
▴ 50
0
votes
3
replies
2.3k
views
Creating a package
Saccharomyces cerevisiae
BSgenome
Biostrings
BSgenome
Saccharomyces cerevisiae
BSgenome
updated 11.6 years ago by
James W. MacDonald
68k • written 11.6 years ago by
Guest User
★ 13k
0
votes
1
reply
2.1k
views
BiocParallel fatal error
BiocParallel
BiocParallel
updated 11.6 years ago by
Martin Morgan
25k • written 11.6 years ago by
Guest User
★ 13k
0
votes
2
replies
1.8k
views
Gene expression analysis with edgeR with a large, nested design matrix
edgeR
edgeR
updated 11.6 years ago by
Ulrich Braunschweig
▴ 10 • written 11.6 years ago by
Gordon Smyth
53k
0
votes
0
replies
656
views
reading CapitalBio corp microarray data with read.myimages
Microarray
limma
Microarray
limma
11.6 years ago
Romain Desert
▴ 30
2
votes
9
replies
12k
views
DESeq2: up- and down-regulated genes
DESeq2
DESeq2
updated 11.6 years ago by
Simon Anders
★ 3.8k • written 11.6 years ago by
Alicia R. Pérez-Porro
▴ 140
0
votes
0
replies
1.5k
views
edgeR for RNA-seq: nested paired analysis with uneven groups
edgeR
edgeR
11.6 years ago
Guest User
★ 13k
0
votes
2
replies
2.2k
views
DESeq2 - precisions about interaction and fold change calculation
DESeq2
DESeq2
updated 11.6 years ago by
Michael Love
43k • written 11.6 years ago by
samuel collombet
▴ 140
0
votes
2
replies
1.4k
views
Gene expression and multivariables
updated 11.6 years ago by
Paul Geeleher
★ 1.3k • written 11.6 years ago by
chris Jhon
▴ 260
0
votes
5
replies
2.7k
views
genefilter vs limma - many probes filtered
hgu133plus2
limma
hgu133plus2
limma
updated 11.6 years ago by
Gordon Smyth
53k • written 11.6 years ago by
Guest User
★ 13k
0
votes
6
replies
2.4k
views
limma vs t-test
updated 3.0 years ago by
Gordon Smyth
53k • written 11.6 years ago by
Guest User
★ 13k
0
votes
3
replies
1.9k
views
biomaRt proxy issues
biomaRt
biomaRt
updated 11.6 years ago by
Bill Raynor
▴ 30 • written 11.6 years ago by
Guest User
★ 13k
0
votes
4
replies
2.0k
views
edgeR calcNormFactors for paired counts
RNASeq
Normalization
edgeR
RNASeq
Normalization
edgeR
updated 11.6 years ago by
Ryan C. Thompson
★ 7.9k • written 11.6 years ago by
Christopher T Gregg
▴ 210
0
votes
3
replies
1.6k
views
Unable to load 'xps' library
xps
xps
updated 11.6 years ago by
cstrato
★ 3.9k • written 11.6 years ago by
Lili, Loukia
▴ 20
0
votes
0
replies
1.8k
views
minfi release 1.8
SNP
Annotation
GO
probe
SNPlocs
PROcess
minfi
bumphunter
ChAMP
SNP
Annotation
GO
probe
11.6 years ago
swarmqq@gmail.com
▴ 10
0
votes
0
replies
965
views
limma and t-test, third time's a charm
Microarray
limma
Microarray
limma
11.6 years ago
Giovanni Bucci
▴ 60
0
votes
6
replies
2.1k
views
Package "makecdfenv"
cdf
cdf
11.6 years ago
James W. MacDonald
68k
0
votes
0
replies
868
views
limma & t-test, third time's a charm
Microarray
limma
Microarray
limma
11.6 years ago
Guest User
★ 13k
0
votes
2
replies
3.3k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 11.6 years ago by
James W. MacDonald
68k • written 11.6 years ago by
Nicole Ertl
▴ 10
0
votes
0
replies
1.4k
views
Gene expression analysis with edgeR with a large, nested design matrix
edgeR
edgeR
11.6 years ago
Guest User
★ 13k
0
votes
2
replies
1.5k
views
Gviz Incorrect Labels on Features
Annotation
Gviz
Annotation
Gviz
updated 11.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 11.6 years ago by
Lance Parsons
▴ 130
0
votes
1
reply
2.1k
views
snpStats reference allele used in genetic associations?
SNP
Category
snpStats
SNP
Category
snpStats
updated 11.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.6 years ago by
Guest User
★ 13k
0
votes
1
reply
2.1k
views
limma: percent of variance explained
Genetics
limma
Genetics
limma
updated 11.6 years ago by
Gordon Smyth
53k • written 11.6 years ago by
Julien Roux
▴ 90
0
votes
3
replies
2.2k
views
ComBat:RT-PCR Data
Microarray
Microarray
updated 11.6 years ago by
GS
▴ 20 • written 11.6 years ago by
W. Evan Johnson
▴ 870
0
votes
4
replies
3.5k
views
Error: could not find function "plotPCA"
GO
affycoretools
KEGGREST
GO
affycoretools
KEGGREST
updated 11.6 years ago by
Michael Love
43k • written 11.6 years ago by
Surles, Monique
▴ 50
0
votes
8
replies
2.2k
views
Error DEXSeq
updated 11.6 years ago by
Alejandro Reyes
★ 1.9k • written 11.6 years ago by
Guest User
★ 13k
0
votes
0
replies
2.4k
views
t-test vs limma
Microarray
limma
Microarray
limma
11.6 years ago
Guest User
★ 13k
0
votes
0
replies
806
views
BHC appears to be broken
11.6 years ago
OLIVER, DAVID
▴ 10
0
votes
3
replies
2.6k
views
DESeq/DESeq normalization on different experiments
Normalization
Organism
DESeq
Normalization
Organism
DESeq
updated 11.6 years ago by
Ryan C. Thompson
★ 7.9k • written 11.6 years ago by
Guest User
★ 13k
2
votes
6
replies
4.5k
views
Looping over entries of a GRanges object
updated 11.6 years ago by
Michael Lawrence
★ 11k • written 11.6 years ago by
Julian Gehring
★ 1.3k
0
votes
2
replies
1.4k
views
color-coded arch intensity in ggbio
ggbio
ggbio
updated 11.6 years ago by
Tengfei Yin
▴ 420 • written 11.6 years ago by
Bogdan
▴ 670
0
votes
4
replies
2.0k
views
error on loading ratioConvert() in minfi
convert
minfi
convert
minfi
updated 11.6 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
DEseq error
RNASeq
DESeq
RNASeq
DESeq
updated 11.6 years ago by
Simon Anders
★ 3.8k • written 11.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.0k
views
[devteam-bioc] readGAlignmentPairs perfromace issue
RNASeq
Cancer
RNASeq
Cancer
11.6 years ago
Hervé Pagès
16k
0
votes
2
replies
1.9k
views
limma: design for paired data with multiple time points
limma
limma
updated 11.6 years ago by
James W. MacDonald
68k • written 11.6 years ago by
Jonathan Ellis
▴ 30
46,706 results • Page
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You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…
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