Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
6
replies
1.9k
views
request
RNASeq
DESeq
RNASeq
DESeq
12.4 years ago
Alexey Moskalev
▴ 30
0
votes
2
replies
1.1k
views
Limma\'s roast() does not accept weigths in combination with block
updated 12.4 years ago by
Gordon Smyth
53k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
答复: an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
12.4 years ago
joseph
▴ 50
0
votes
2
replies
1.2k
views
DNAStringSetList can't coerce a list?
Cancer
Cancer
12.4 years ago
Taylor, Sean D
▴ 250
0
votes
2
replies
1.8k
views
Extracting overlapping gene names from a list of peaks
ChIPSeq
chipseq
ChIPSeq
chipseq
updated 12.4 years ago by
Michael Lawrence
★ 11k • written 12.4 years ago by
Patrick Schorderet
▴ 20
0
votes
0
replies
962
views
HTqPCR problem with ttestCtData function
Normalization
Normalization
12.4 years ago
Ruben Dries
▴ 10
0
votes
3
replies
1.4k
views
ggbio facet_gr example sought
updated 12.4 years ago by
Michael Lawrence
★ 11k • written 12.4 years ago by
Malcolm Cook
★ 1.6k
0
votes
2
replies
1.1k
views
ggbio: Data stored twice in 'GGbio' object
updated 12.4 years ago by
Michael Lawrence
★ 11k • written 12.4 years ago by
Julian Gehring
★ 1.3k
0
votes
3
replies
3.0k
views
XCMS query regarding mzXML
xcms
xcms
updated 12.4 years ago by
Laurent Gatto
1.6k • written 12.4 years ago by
Reema Singh
▴ 570
0
votes
2
replies
1.2k
views
EdgeR: general advice on using edgeR for sRNA analysis
Normalization
edgeR
Normalization
edgeR
updated 12.4 years ago by
Gordon Smyth
53k • written 12.4 years ago by
Kenlee Nakasugi
▴ 30
0
votes
0
replies
1.5k
views
CGHCall problems
aCGH
probe
DNAcopy
aCGH
CGHcall
aCGH
probe
DNAcopy
aCGH
CGHcall
12.4 years ago
Guest User
★ 13k
0
votes
0
replies
940
views
topGO question
topGO
topGO
12.4 years ago
Datong Wang
▴ 10
0
votes
1
reply
1.1k
views
[devteam-bioc] Failure to update to Bioconductor 2.12 from bioconductor 2.11
updated 12.4 years ago by
Das, D.
▴ 10 • written 12.4 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
1.5k
views
Error in .testGOFrame(x, organism) and invalid GO Evidence codes
GO
Organism
GO
Organism
updated 12.4 years ago by
Marc Carlson
★ 7.2k • written 12.4 years ago by
Zhidong Yuan
▴ 10
0
votes
0
replies
1.2k
views
pathview, when multiple entrzgene ids were mapper to the same node in kegg pathway
pathview
pathview
12.4 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
617
views
Limma: how to set the selection by p-value
limma
limma
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
updated 12.4 years ago by
Marc Carlson
★ 7.2k • written 12.4 years ago by
joseph
▴ 50
0
votes
0
replies
1.1k
views
Problems with 'dataset' argument for parseWorkspace() or read.flowSet()
flowCore
flowCore
12.4 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
815
views
Interpretation of output files
Annotation
rtracklayer
TSSi
Annotation
rtracklayer
TSSi
updated 12.4 years ago by
Julian Gehring
★ 1.3k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Failure to update to Bioconductor 2.12 from bioconductor 2.11
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Guest User
★ 13k
0
votes
2
replies
5.0k
views
Bioconductor: CPM and log(CPM) values in EdgeR does not match
RNASeq
edgeR
RNASeq
edgeR
updated 12.4 years ago by
Michael Stadler
▴ 350 • written 12.4 years ago by
CSRK (Christian Schrøder Kaas)
▴ 10
0
votes
6
replies
3.9k
views
RNASeq:- getting Zero Count
RNASeq
RNASeq
updated 12.4 years ago by
Valerie Obenchain
★ 6.8k • written 12.4 years ago by
Reema Singh
▴ 570
0
votes
5
replies
2.2k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation
GO
BSgenome
cdf
BSgenome
Rsubread
Annotation
GO
BSgenome
cdf
BSgenome
12.4 years ago
Alan Smith
▴ 150
0
votes
0
replies
1.5k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation
GO
BSgenome
cdf
BSgenome
Rsubread
Annotation
GO
BSgenome
cdf
BSgenome
12.4 years ago
Wei Shi
★ 3.6k
0
votes
0
replies
1.5k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation
GO
BSgenome
cdf
BSgenome
Rsubread
Annotation
GO
BSgenome
cdf
BSgenome
12.4 years ago
Wei Shi
★ 3.6k
0
votes
0
replies
1.6k
views
RIPSeeker multicore option not working fully?
GO
biomaRt
RIPSeeker
GO
biomaRt
RIPSeeker
12.4 years ago
Davis, Wade
▴ 350
0
votes
8
replies
2.2k
views
Filtering BAM files by start position for VariantTools
Coverage
Cancer
cycle
VariantTools
Coverage
Cancer
cycle
VariantTools
updated 12.4 years ago by
Taylor, Sean D
▴ 250 • written 12.4 years ago by
Martin Morgan
25k
0
votes
1
reply
1.7k
views
using pathview about hsa01100
updated 12.4 years ago by
Luo Weijun
★ 1.6k • written 12.4 years ago by
Ed
▴ 230
0
votes
1
reply
829
views
cdf redesign
cdf
convert
cdf
convert
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Claudio Isella
▴ 30
0
votes
1
reply
980
views
inSilicoMerging package
updated 12.4 years ago by
Dan Tenenbaum
▴ 60 • written 12.4 years ago by
Li Liu
▴ 100
0
votes
2
replies
844
views
difference in results using different edgeR package versions
edgeR
edgeR
updated 12.4 years ago by
Steve Lianoglou
★ 13k • written 12.4 years ago by
Fernando Biase
▴ 20
0
votes
3
replies
2.0k
views
about running gsva on mac
PROcess
GSVA
PROcess
GSVA
updated 12.4 years ago by
Devon Ryan
▴ 200 • written 12.4 years ago by
Ed
▴ 230
0
votes
0
replies
1.4k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation
GO
BSgenome
BSgenome
Annotation
GO
BSgenome
BSgenome
12.4 years ago
Alan Smith
▴ 150
0
votes
0
replies
916
views
Problems with 'dataset' argument for parseWorkspace() or read.flowSet()
12.4 years ago
Silke Zachariae
▴ 30
0
votes
9
replies
2.0k
views
AnnotationHub man page improvements
updated 12.4 years ago by
Marc Carlson
★ 7.2k • written 12.4 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
3
replies
1.3k
views
likely bug in cbind() for DataFrame
updated 12.4 years ago by
Michael Lawrence
★ 11k • written 12.4 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
3.2k
views
Pathview with non-KEGG organisms?
Microbiome
Pathways
GO
Visualization
Organism
graph
gage
pathview
Microbiome
Pathways
GO
12.4 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
812
views
rtracklayer problem on large number of GRanges
Cancer
Cancer
12.4 years ago
Janet Young
▴ 740
0
votes
6
replies
2.4k
views
error when loading mzR
xcms
mzR
xcms
mzR
updated 12.4 years ago by
Steve Lianoglou
★ 13k • written 12.4 years ago by
Guest User
★ 13k
0
votes
0
replies
970
views
HTqPCR normalization issue ?
Normalization
HTqPCR
Normalization
HTqPCR
12.4 years ago
alessandro.guffanti@genomnia.com
▴ 330
0
votes
0
replies
1.4k
views
Error converting SBML to graph Object using R SBML
Network
graph
convert
rsbml
Network
graph
convert
rsbml
12.4 years ago
Michael Lawrence
★ 11k
0
votes
2
replies
1.6k
views
RIPSeeker multicore option not working fully?
Annotation
GO
RIPSeeker
Annotation
GO
RIPSeeker
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
Davis, Wade
▴ 350
0
votes
3
replies
2.4k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter
genefilter
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
1.8k
views
Limma removeBatchEffect
limma
limma
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
arne.mueller@novartis.com
▴ 200
0
votes
0
replies
1.7k
views
ClusterProfiler Help
12.4 years ago
kuntal worah
▴ 30
0
votes
0
replies
877
views
rtracklayer carrying over query results
rtracklayer
rtracklayer
12.4 years ago
Janet Young
▴ 740
0
votes
5
replies
1.6k
views
rtracklayer error?
Cancer
rtracklayer
Cancer
rtracklayer
12.4 years ago
Janet Young
▴ 740
0
votes
2
replies
2.1k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation
hgu133plus2
probe
Annotation
hgu133plus2
probe
updated 12.4 years ago by
Yuan Hao
▴ 240 • written 12.4 years ago by
Levi Waldron
★ 1.1k
0
votes
1
reply
773
views
Error in extracting genes from Goterms using GOStats package
Annotation
GO
GOstats
Annotation
GO
GOstats
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
928
views
issue on removing all NAs (UNANNOTATED) rows
probe
limma
probe
limma
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Guest User
★ 13k
46,699 results • Page
531 of 934
Recent ...
Replies
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
by
TikTsokaasocissalpc
• 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Istvan Albert
▴ 50
Popular Question
to
Dario Strbenac
★ 1.6k
Scholar
to
Nikos Ignatiadis
▴ 180
Locations
• All
United States,
1 hour ago
Ireland,
2 hours ago
United States,
2 hours ago
United States,
4 hours ago
United States,
4 hours ago
Traffic: 1010 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6