0
votes
1
reply
2.1k
views
Problem with limma's topTable lfc filter when more than 1 contrast is output
limma limma
updated 14.0 years ago by ▴ 70 • written 14.0 years ago by 53k
0
votes
3
replies
1.2k
views
2 color microarray and decidetests output
Cancer limma Cancer limma
14.0 years ago Srikanth Manda Srinivas ▴ 200
0
votes
1
reply
1.1k
views
2 color microarray decidetests Output
Cancer limma Cancer limma
14.0 years ago Srinivas Srikanth ▴ 70
0
votes
0
replies
713
views
error in compute contrasts for two color data
14.0 years ago sara domingos ▴ 10
0
votes
0
replies
1.1k
views
Comparing single and two-color arrays
limma limma
14.0 years ago January Weiner ▴ 240
0
votes
1
reply
645
views
Mailing list
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 10
0
votes
1
reply
839
views
Is there any way to merge all yeilds of FastqStreamer?
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 260
0
votes
2
replies
1.8k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 230
0
votes
2
replies
2.1k
views
shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA
Cancer Cancer
updated 14.0 years ago by ▴ 100 • written 14.0 years ago by 16k
0
votes
1
reply
722
views
processSwathData for HumanHT-12 v4
updated 14.0 years ago by ★ 6.6k • written 14.1 years ago by ▴ 20
0
votes
0
replies
3.2k
views
Postdoctoral position at Novartis, Basel
Sequencing Microarray Sequencing Microarray
14.0 years ago Kauffmann, Audrey ▴ 60
0
votes
3
replies
1.1k
views
miRNA normalisation
GO probe GO probe
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 40
0
votes
1
reply
1.0k
views
HTqPCR and Biobase's eSet
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 40
0
votes
1
reply
1.8k
views
HTqPCR problem with replicates
ddCt HTqPCR ddCt HTqPCR
updated 14.0 years ago by ★ 2.0k • written 14.1 years ago by ▴ 320
0
votes
4
replies
3.0k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 14.0 years ago by ★ 8.2k • written 14.0 years ago by ▴ 70
0
votes
1
reply
978
views
Strecth of N's in between reads
convert convert
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 120
0
votes
0
replies
920
views
create GeneSetCollection from OBOCollection
GO convert GOstats GO convert GOstats
14.0 years ago Wendy Qiao ▴ 360
0
votes
10
replies
2.9k
views
GRanges setdiff With Features on Both Strands
updated 14.0 years ago by 16k • written 14.1 years ago by ★ 1.6k
0
votes
1
reply
4.4k
views
writing BAM files from within R
convert Rsamtools convert Rsamtools
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 10
0
votes
1
reply
1.8k
views
GAGE vs other GO analysis tools
Microarray Pathways GO gage Microarray Pathways GO gage
updated 14.0 years ago by ★ 1.6k • written 14.1 years ago by ▴ 240
0
votes
0
replies
1.1k
views
Problem with limma's topTable lfc filter when more than 1 contrast is in output
limma limma
14.0 years ago Vladimir Zhurov ▴ 70
0
votes
1
reply
887
views
[XPS] Background computation on single CEL file
PROcess xps PROcess xps
updated 14.0 years ago by ★ 3.9k • written 14.1 years ago by ▴ 50
0
votes
0
replies
924
views
[lumi] 450k methylation color correction issue.
probe probe
14.0 years ago Geoff Woodward ▴ 30
0
votes
0
replies
1.2k
views
rGADEM crash
rGADEM rGADEM
14.0 years ago Arnaud Droit ▴ 20
0
votes
0
replies
985
views
Workshop, Feb 27/28: Advanced R / Bioconductor Workshop on High-Throughput Genetic Analysis
Cancer Cancer
14.0 years ago Martin Morgan 25k
0
votes
1
reply
853
views
Error message when trying to create enrichment maps in HTSanalyzeR
HTSanalyzeR HTSanalyzeR
updated 14.0 years ago by ★ 6.8k • written 14.1 years ago by ▴ 30
0
votes
1
reply
1.3k
views
Problem with limma's topTable lfc filter when more than 1 contrast is in output
limma limma
updated 14.1 years ago by ▴ 650 • written 14.1 years ago by ▴ 70
0
votes
0
replies
1.2k
views
htSeqTools: using GRanges and GRangesList
convert htSeqTools convert htSeqTools
14.1 years ago Oscar Reina ▴ 20
0
votes
1
reply
985
views
narrow on GappedAlignments fails with error
updated 14.1 years ago by 25k • written 14.0 years ago by ▴ 100
0
votes
1
reply
793
views
how to replace NA by 1
updated 14.1 years ago by 21k • written 14.1 years ago by ★ 2.0k
0
votes
1
reply
939
views
LVSmiRNA for EList,
updated 14.1 years ago by ▴ 90 • written 14.1 years ago by ▴ 290
0
votes
0
replies
1.6k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
14.1 years ago Olivier Lucas ▴ 40
0
votes
5
replies
1.4k
views
Two populations on microarray
limma limma
updated 14.1 years ago by ▴ 50 • written 14.1 years ago by ▴ 60
0
votes
3
replies
1.3k
views
is matchPattern faster?
updated 14.1 years ago by ▴ 590 • written 14.1 years ago by ★ 2.0k
0
votes
2
replies
1.2k
views
a question about trimLRPatterns?
PROcess PROcess
updated 14.1 years ago by ▴ 590 • written 14.1 years ago by ★ 2.0k
0
votes
1
reply
1.0k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 110
0
votes
0
replies
957
views
down-weighting control probes in limma (with Agilent arrays)?
Normalization limma Normalization limma
14.1 years ago boczniak767 ▴ 740
0
votes
7
replies
2.7k
views
about reduce function in GenomicRanges
Alignment Alignment
14.1 years ago Tarca, Adi ▴ 570
1
vote
2
replies
7.2k
views
how to get a list of the genes in each module in WGCNA
updated 14.1 years ago by ▴ 340 • written 14.1 years ago by ★ 13k
0
votes
3
replies
1.5k
views
OpenSuse 11.4, cannot install Bioconductor due to missing C compiler
updated 14.1 years ago by ★ 8.2k • written 14.1 years ago by ▴ 60
0
votes
1
reply
1.4k
views
ilumina CanineHD
cdf crlmm cdf crlmm
updated 14.1 years ago by ▴ 1000 • written 14.1 years ago by ▴ 10
0
votes
3
replies
1.5k
views
[lumi] methyLumiR upload error of 450k
updated 14.1 years ago by ▴ 20 • written 14.1 years ago by ▴ 30
0
votes
0
replies
2.1k
views
Removing continuous confounding technical variables by using ComBat in SVA package or another approach
14.1 years ago Djie Tjwan Thung ▴ 90
0
votes
4
replies
1.6k
views
Anything wrong with http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.13
14.1 years ago Peng Yu ▴ 950
0
votes
1
reply
1.1k
views
[Rocky] - LIMMA to identify deferentially expressed genes
affy limma GLAD affy limma GLAD
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Advanced RNA-Seq and ChiP-Seq Data Analysis course, 1-4 May 2012
14.1 years ago Gabriella Rustici ▴ 60
0
votes
3
replies
3.1k
views
How to prepare Custom INPUT(DATA) files for GAGE Analysis and DO a BASIC GAGE analysis using those files
Microarray GO Cancer Breast gage Microarray GO Cancer Breast gage
updated 14.1 years ago by ▴ 200 • written 14.1 years ago by ★ 6.8k
0
votes
0
replies
901
views
down-weighting control probes in limma (with Agilent arrays)?
Normalization limma Normalization limma
14.1 years ago Daniel Aaen Hansen ▴ 90
0
votes
5
replies
1.5k
views
Bioconductor AMI NOT FOUND
updated 14.1 years ago by ★ 8.2k • written 14.1 years ago by ★ 13k
0
votes
1
reply
2.0k
views
Annotating limma results: Affymetrix probe IDs not mapping to hugene10stprobeset.db
Microarray Annotation annotate limma Microarray Annotation annotate limma
updated 14.1 years ago by 68k • written 14.1 years ago by ▴ 290
46,741 results • Page 605 of 935
Recent ...
Replies
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Awards • All
Teacher to Michael Love 43k
Supporter to fl ▴ 20
Popular Question to James W. MacDonald 68k
Popular Question to rcavalca ▴ 140
Popular Question to James Aiden • 0
Locations • All
The city by the bay, 3 minutes ago
Pakistan, 9 minutes ago
USA, 9 minutes ago
Barcelona, Spain, 28 minutes ago
United States, 1 hour ago
Traffic: 1210 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6