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Views
Votes
0
votes
0
replies
898
views
Help on Cosmo back ground model
probe
cosmo
probe
cosmo
15.8 years ago
Prashantha Hebbar
▴ 260
0
votes
2
replies
1.6k
views
getSeq error with multiple inqueries, BSgenome
BSgenome
BSgenome
BSgenome
BSgenome
updated 15.8 years ago by
Hervé Pagès
16k • written 15.8 years ago by
sabrina.shao
▴ 220
0
votes
0
replies
636
views
affycomp updated in release branch
15.8 years ago
Harris A. Jaffee
▴ 590
0
votes
9
replies
4.2k
views
heatmap for high number of genes
updated 15.8 years ago by
Steve Lianoglou
★ 13k • written 15.8 years ago by
avehna
▴ 240
0
votes
0
replies
794
views
landscape genetics analysis
Genetics
Genetics
15.8 years ago
milton ruser
▴ 20
0
votes
0
replies
1.6k
views
GEOquery question -- suppressing download for GPL queries?
Annotation
GEOquery
GEOmetadb
Annotation
GEOquery
GEOmetadb
15.8 years ago
Sean Davis
21k
0
votes
0
replies
850
views
COURSE: Microarray Analysis in R (Bioconductor) from Imperial College
Microarray
Microarray
15.8 years ago
North, Bernard V
▴ 120
0
votes
2
replies
1.3k
views
Loop design - biological, technical replication and contrasts
limma
limma
updated 15.8 years ago by
avehna
▴ 240 • written 15.8 years ago by
boczniak767
▴ 740
0
votes
0
replies
937
views
Help on Cosmo
probe
cosmo
probe
cosmo
15.8 years ago
Prashantha Hebbar Kiradi [MU-MLSC]
▴ 90
0
votes
14
replies
2.2k
views
GO's to gene's
GO
GO
updated 15.8 years ago by
Marc Carlson
★ 7.2k • written 15.8 years ago by
Loren Engrav
★ 1.0k
0
votes
4
replies
1.6k
views
makePDpackage
probe
annotate
probe
annotate
updated 15.8 years ago by
Benilton Carvalho
★ 4.3k • written 15.8 years ago by
fire1976 wyoming
▴ 380
0
votes
0
replies
1.1k
views
pair information of microRNA and Targets prediction
microRNA
RmiR
microRNA
RmiR
15.8 years ago
jrwang@itri.org.tw
▴ 60
0
votes
12
replies
3.7k
views
how to use rtracklayer to retrieve sequence of list of coordinates
rtracklayer
rtracklayer
updated 15.8 years ago by
Steve Lianoglou
★ 13k • written 15.8 years ago by
sabrina.shao
▴ 220
0
votes
11
replies
2.0k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
15.8 years ago
Mikhail Pachkov
▴ 110
0
votes
0
replies
1.1k
views
Mapping using absolute coordinates
Alignment
Alignment
15.8 years ago
Ludo Pagie
▴ 20
0
votes
5
replies
1.5k
views
Search queries with biomaRt does not align with online queries via ensembl
GO
hgu133plus2
biomaRt
GO
hgu133plus2
biomaRt
updated 15.8 years ago by
Tony Chiang
▴ 570 • written 15.8 years ago by
Hotz, Hans-Rudolf
▴ 400
0
votes
1
reply
1.0k
views
Porting RWebServices from Axis1 to Axis2
RWebServices
RWebServices
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Michael Dondrup
▴ 550
0
votes
0
replies
736
views
beginner limma q
limma
limma
15.8 years ago
Gordon Smyth
53k
0
votes
0
replies
919
views
Search queries with biomaRt does not align with online queries via ensembl
GO
hgu133plus2
biomaRt
GO
hgu133plus2
biomaRt
15.8 years ago
Tony Chiang
▴ 570
0
votes
0
replies
1.3k
views
limma and p-value cutoff
limma
limma
15.8 years ago
avehna
▴ 240
0
votes
0
replies
959
views
ChipPeakAnno
15.8 years ago
Julie Zhu
★ 4.3k
6
votes
2
replies
1.3k
views
pair information of microRNA and Targets prediction
microRNA
RmiR
microRNA
RmiR
updated 15.8 years ago by
Laurent Gautier
★ 2.3k • written 15.8 years ago by
jrwang@itri.org.tw
▴ 60
0
votes
0
replies
997
views
Mapping using absolute coordinates
15.8 years ago
Droit Arnaud
▴ 130
0
votes
0
replies
845
views
landscape genetics analysis
15.8 years ago
milton ruser
▴ 20
0
votes
0
replies
1.2k
views
OT: biostar questions and answers
15.8 years ago
Istvan Albert
▴ 50
0
votes
10
replies
3.5k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray
Normalization
cdf
oligo
DTA
Microarray
Normalization
cdf
oligo
DTA
updated 15.8 years ago by
Benilton Carvalho
★ 4.3k • written 15.8 years ago by
Mikhail Pachkov
▴ 110
0
votes
1
reply
1.3k
views
DNAcopy installation error
DNAcopy
DNAcopy
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
seth redmond
▴ 10
0
votes
2
replies
1.6k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray
Annotation
Normalization
Preprocessing
cdf
probe
affy
affyPLM
oligo
Microarray
updated 15.8 years ago by
Ben Bolstad
★ 1.2k • written 15.8 years ago by
Benilton Carvalho
★ 4.3k
0
votes
3
replies
1.4k
views
ChIPpeakAnno
Transcription
ChIPpeakAnno
Transcription
ChIPpeakAnno
15.9 years ago • updated 15.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
857
views
Loop design - biological, technical replication and contrasts
limma
limma
15.8 years ago
boczniak767
▴ 740
0
votes
0
replies
838
views
JOB: Open position within the Rfam group at the Sanger Institute (fwd)
15.8 years ago
Cei Abreu-Goodger
▴ 830
1
vote
2
replies
4.9k
views
ANOVA vs T-TEST vs eBayes
Microarray
limma
Microarray
limma
updated 15.8 years ago by
Simon Anders
★ 3.8k • written 15.8 years ago by
avehna
▴ 240
0
votes
0
replies
684
views
beginner limma q
limma
limma
15.8 years ago
Marissa LaMadrid
▴ 10
0
votes
1
reply
725
views
taking the median across similar data
miRNA
miRNA
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Harikrishnadhar
▴ 40
0
votes
2
replies
1.0k
views
missing example data from cghMCR package
GO
GO
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Burak Kutlu
▴ 140
0
votes
4
replies
1.2k
views
multi genome comparison
updated 15.8 years ago by
Michael Lawrence
★ 11k • written 15.8 years ago by
Cheng-Yuan Kao
▴ 100
0
votes
4
replies
1.6k
views
Query
Sequencing
Sequencing
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Yogesh Kumar
▴ 10
0
votes
6
replies
2.2k
views
PdInfoBuilder for nimblegen array
Annotation
Organism
oligo
pdInfoBuilder
Annotation
Organism
oligo
pdInfoBuilder
updated 15.8 years ago by
Benilton Carvalho
★ 4.3k • written 15.8 years ago by
Alex Rodriguez
▴ 40
0
votes
9
replies
2.7k
views
problems with bioconductor installation
updated 15.8 years ago by
Hervé Pagès
16k • written 15.8 years ago by
Pete Shepard
▴ 240
0
votes
2
replies
2.5k
views
seqinr write.fasta problem with max characters per line
updated 15.8 years ago by
Moshe Olshansky
▴ 120 • written 15.8 years ago by
Jonathan
▴ 60
0
votes
2
replies
1.7k
views
Affxparser: warning creating cel file from AffyBatch
cdf
affy
affxparser
cdf
affy
affxparser
15.8 years ago
Guido Hooiveld
★ 4.1k
0
votes
2
replies
1.3k
views
Issues with RWebServices on MacOSX, ant rservices-test fails (1)
RWebServices
SJava
RWebServices
SJava
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Michael Dondrup
▴ 550
0
votes
1
reply
1.7k
views
info for cuda on R
updated 15.8 years ago by
Manca Marco PATH
▴ 200 • written 15.8 years ago by
Alberto Goldoni
▴ 420
0
votes
0
replies
858
views
Call for papers: BCBGC-10, Orlando, USA, July 2010
15.8 years ago
John Edward
▴ 80
0
votes
1
reply
913
views
Empirical Pvalue
updated 15.8 years ago by
Hervé Pagès
16k • written 15.8 years ago by
Mohamed Lajnef
▴ 250
0
votes
4
replies
1.7k
views
Bioconductor Digest, Vol 84, Issue 19
Proteomics
Proteomics
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
836
views
Normalization question
Normalization
affy
GOstats
Normalization
affy
GOstats
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Yong Li
▴ 190
0
votes
5
replies
1.6k
views
variation between cells compared to samples
RNASeq
RNASeq
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Pete Shepard
▴ 240
0
votes
0
replies
1.6k
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics
Cheminformatics
Visualization
xcms
Metabolomics
Cheminformatics
Visualization
15.8 years ago
Gabriella Rustici
▴ 60
0
votes
4
replies
2.7k
views
How does the rank product calculate the fold change
limma
limma
updated 15.8 years ago by
Georg Hildebrand
▴ 10 • written 15.8 years ago by
Hildebrand, Georg
▴ 30
46,695 results • Page
680 of 934
Recent ...
Replies
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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