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0
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898
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Help on Cosmo back ground model
probe cosmo probe cosmo
15.8 years ago Prashantha Hebbar ▴ 260
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affycomp updated in release branch
15.8 years ago Harris A. Jaffee ▴ 590
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9
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heatmap for high number of genes
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 240
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15.8 years ago milton ruser ▴ 20
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GEOquery question -- suppressing download for GPL queries?
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15.8 years ago Sean Davis 21k
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COURSE: Microarray Analysis in R (Bioconductor) from Imperial College
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15.8 years ago North, Bernard V ▴ 120
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Loop design - biological, technical replication and contrasts
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15.8 years ago Prashantha Hebbar Kiradi [MU-MLSC] ▴ 90
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4
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makePDpackage
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updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 380
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15.8 years ago jrwang@itri.org.tw ▴ 60
0
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how to use rtracklayer to retrieve sequence of list of coordinates
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15.8 years ago Mikhail Pachkov ▴ 110
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15.8 years ago Ludo Pagie ▴ 20
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Porting RWebServices from Axis1 to Axis2
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Search queries with biomaRt does not align with online queries via ensembl
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limma and p-value cutoff
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pair information of microRNA and Targets prediction
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Mapping using absolute coordinates
15.8 years ago Droit Arnaud ▴ 130
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RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
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updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 10
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RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
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ChIPpeakAnno
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15.9 years ago • updated 15.8 years ago Julie Zhu ★ 4.3k
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Loop design - biological, technical replication and contrasts
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15.8 years ago boczniak767 ▴ 740
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15.8 years ago Cei Abreu-Goodger ▴ 830
1
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ANOVA vs T-TEST vs eBayes
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updated 15.8 years ago by ★ 3.8k • written 15.8 years ago by ▴ 240
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beginner limma q
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15.8 years ago Marissa LaMadrid ▴ 10
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taking the median across similar data
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updated 15.8 years ago by 16k • written 15.8 years ago by ▴ 240
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updated 15.8 years ago by ▴ 120 • written 15.8 years ago by ▴ 60
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Affxparser: warning creating cel file from AffyBatch
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15.8 years ago Guido Hooiveld ★ 4.1k
0
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2
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updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 550
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info for cuda on R
updated 15.8 years ago by ▴ 200 • written 15.8 years ago by ▴ 420
0
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15.8 years ago John Edward ▴ 80
0
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913
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Empirical Pvalue
updated 15.8 years ago by 16k • written 15.8 years ago by ▴ 250
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Bioconductor Digest, Vol 84, Issue 19
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updated 15.8 years ago by 25k • written 15.8 years ago by ★ 1.4k
0
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836
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updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 190
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updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 240
0
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'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
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15.8 years ago Gabriella Rustici ▴ 60
0
votes
4
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How does the rank product calculate the fold change
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updated 15.8 years ago by ▴ 10 • written 15.8 years ago by ▴ 30
46,695 results • Page 680 of 934
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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