0
votes
5
replies
1.8k
views
installing xps
xps xps
updated 17.1 years ago by ★ 3.9k • written 17.1 years ago by ★ 1.3k
0
votes
1
reply
1.2k
views
Support vector model?
17.1 years ago Celine Carret ▴ 220
0
votes
4
replies
1.5k
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sequence_3utr_start and sequence_3utr_end
updated 17.1 years ago by ▴ 930 • written 17.1 years ago by ▴ 50
0
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0
replies
1.1k
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Intermediate BioC Course 21-23 Jan 09: Analyzing Microarray and Sequencing Experiments
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17.1 years ago Patrick Aboyoun ★ 1.6k
0
votes
3
replies
1.4k
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issue with lmFit in limma
limma PROcess limma PROcess
updated 17.1 years ago by 68k • written 17.1 years ago by ▴ 60
0
votes
9
replies
2.3k
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analyze HuEx array using HuGene .cdf file
cdf cdf
updated 17.1 years ago by ★ 2.4k • written 17.1 years ago by ★ 1.0k
0
votes
2
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2.0k
views
screeplot in package pcaMethods fails
pcaMethods pcaMethods
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 20
0
votes
0
replies
1.3k
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1st Call for Papers - 2nd International Symposium on Distributed Computing and Artificial Intelligence (DCAI'09)
17.1 years ago Nora Muda ▴ 70
0
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0
replies
769
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Question about graph package
Cancer graph Rgraphviz Cancer graph Rgraphviz
17.1 years ago Florian Hahne ▴ 540
0
votes
0
replies
1.6k
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
17.1 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
2.8k
views
Error message when fitting linear model to Affy data
updated 17.1 years ago by ★ 1.1k • written 17.1 years ago by ▴ 20
0
votes
8
replies
2.3k
views
Bimodal Distrinbution
Proteomics Proteomics
updated 17.1 years ago by ▴ 120 • written 17.1 years ago by ▴ 20
0
votes
2
replies
1.5k
views
Microarray PCA/MDS/SVD
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 220
0
votes
1
reply
2.8k
views
forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 17.1 years ago by ★ 2.3k • written 17.1 years ago by ▴ 130
0
votes
3
replies
1.2k
views
filtering or not filtering?
limma limma
updated 17.1 years ago by ★ 2.0k • written 17.1 years ago by ▴ 200
0
votes
7
replies
2.1k
views
Rkeys function from AnnotationDbi returns all Rkeys for a subset
hgu95av2 hgu95av2
updated 17.1 years ago by 68k • written 17.1 years ago by ▴ 110
0
votes
1
reply
872
views
Applying bioconductor functions to files in different Windows directories
annotate affy annotate affy
updated 17.1 years ago by ★ 1.1k • written 17.1 years ago by ▴ 270
0
votes
9
replies
2.3k
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specifications for exonmap database config file?
GO exonmap GO exonmap
updated 17.1 years ago by ★ 2.0k • written 17.1 years ago by ▴ 70
0
votes
0
replies
1.1k
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Job postings
17.1 years ago Rafael A. Irizarry ★ 2.3k
0
votes
2
replies
1.7k
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mapping gene name to affy id
probe biomaRt probe biomaRt
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ▴ 270
0
votes
0
replies
989
views
Detecting mRNA Expression When Somatic Mutations Have
Microarray Cancer Microarray Cancer
17.1 years ago Alicia Oshlack ▴ 70
0
votes
2
replies
3.7k
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biomaRt 3'UTR coordinates
affy affy
17.1 years ago Iain Gallagher ▴ 930
0
votes
1
reply
1.0k
views
Detecting mRNA Expression When Somatic Mutations Have Occurred
Microarray Microarray
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 600
0
votes
2
replies
958
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General normalization problem that's *similar* to microarrays.
Normalization Normalization
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 30
0
votes
1
reply
1.7k
views
Help with getBM using EST ids from zebrafish
Annotation Danio rerio biomaRt Annotation Danio rerio biomaRt
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 300
0
votes
2
replies
1.4k
views
Normalizing data (that is not in microarray "format")
affy affy
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 270
0
votes
0
replies
660
views
First Artificial Intelligence Trading Robot Released
17.1 years ago Michael Hanson ▴ 10
0
votes
4
replies
1.9k
views
xtable links
updated 17.1 years ago by 68k • written 17.1 years ago by ★ 1.1k
0
votes
0
replies
861
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limma design question
GO limma GO limma
17.1 years ago Jenny Drnevich ★ 2.0k
0
votes
2
replies
1.3k
views
build BPMAP File
updated 17.1 years ago by ★ 1.1k • written 17.1 years ago by ▴ 130
0
votes
1
reply
1.1k
views
altrenative gene symbols
convert convert
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 200
0
votes
1
reply
1.3k
views
Extracting rows where any column has a non-zero value
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 40
0
votes
0
replies
842
views
Error with beadarray example
Microarray beadarray Microarray beadarray
17.1 years ago Juan Lewinger ▴ 10
0
votes
2
replies
1.2k
views
Cannot read in CEL files with XPS
Annotation xps Annotation xps
updated 17.1 years ago by ★ 3.9k • written 17.1 years ago by ▴ 10
0
votes
0
replies
934
views
subsetting lumibatch object by probe ID]
probe probe
17.1 years ago Emanuele Marchi ▴ 30
0
votes
0
replies
849
views
subsetting lumibatch object by probe ID
probe probe
17.1 years ago Emanuele Marchi ▴ 30
0
votes
0
replies
1.0k
views
biomaRt with multiple databases/datasets?
Pathways GO biomaRt Pathways GO biomaRt
17.1 years ago T Joshi ▴ 90
0
votes
0
replies
879
views
FW: Plate 20081202PD10 in service holding
17.1 years ago Yogi Sundaravadanam ▴ 320
0
votes
0
replies
1.1k
views
Cannot Subset Columns in beadarray package, ExpressionSetIllumina Class in R-2.8.0, BioBase 2.2.1, beadarray 1.10.0
Cancer beadarray Cancer beadarray
17.1 years ago Julian Lee ▴ 140
0
votes
0
replies
884
views
Problem of combine function when combining different numeric types
convert convert
17.1 years ago Pan Du ★ 1.2k
0
votes
0
replies
831
views
Problem of combine function when combining different numeric types
Cancer convert Cancer convert
17.1 years ago Martin Morgan 25k
0
votes
0
replies
641
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!SPAM: 2 months
17.1 years ago Clyde Scruggs ▴ 10
0
votes
0
replies
777
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!SPAM: Am Mittwoch w�re es besser
17.1 years ago Brigitte ▴ 10
0
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0
replies
520
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!SPAM: $B!p%;%l%V(BVIP$B=w@-L5NA>R2p=j!p(B
17.1 years ago mayu ▴ 10
0
votes
0
replies
481
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!SPAM: $B!z(B100$B!s3N<B!"%*!<%kL5NA$G$4Mx(B
17.1 years ago dshfgkhgl459@yahoo.it ▴ 10
0
votes
0
replies
398
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!SPAM: Aloha
17.1 years ago dcy@bostonsci.com.br ▴ 10
0
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0
replies
880
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!SPAM: VPXL
17.1 years ago Young Reynolds ▴ 10
0
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0
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576
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!SPAM: Tried vacuum pumps and other advertised methods without success ?
17.1 years ago Elisabeth Dugan ▴ 10
0
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0
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698
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!SPAM: Re: Breakthrough formula for men
17.1 years ago Elijah Mathis ▴ 10
0
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0
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933
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!SPAM: Christmas gifft idea!
PROMISE PROMISE
17.1 years ago Earnhardt Tako ▴ 10
46,723 results • Page 729 of 935
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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