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Creation
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Rank
Views
Votes
0
votes
0
replies
792
views
minor fitPLM bug in get.psi.code
17.5 years ago
Paul Boutros
▴ 340
0
votes
0
replies
760
views
Categories microarray data in functional profiles
Microarray
Annotation
GO
Category
Microarray
Annotation
GO
Category
17.5 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
1.8k
views
ReadAffy crashes on mac
affy
BUS
affy
BUS
updated 17.5 years ago by
Henrik Bengtsson
★ 2.4k • written 17.5 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
Offre speciale
17.5 years ago
VoilesNews Magazine
▴ 10
0
votes
1
reply
996
views
Vignette for ShortRead
ShortRead
ShortRead
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
joseph
▴ 330
0
votes
0
replies
1.1k
views
how to get oligoSnpSet object?
SNP
oligo
SNP
oligo
17.5 years ago
Yupu Liang
▴ 50
0
votes
2
replies
1.5k
views
LIMMA - fold change direction?
updated 17.5 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 17.5 years ago by
Glyn Bradley
▴ 30
0
votes
1
reply
2.2k
views
confusion about nomenclature of illumina annotation packages
BiocViews
annotate
biocViews
BiocViews
BiocViews
annotate
biocViews
updated 17.5 years ago by
Lynn Amon
▴ 280 • written 17.5 years ago by
Christian Kohler
▴ 130
0
votes
1
reply
971
views
Affy array layout
updated 17.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 17.5 years ago by
Nathan.Watson-Haigh@csiro.au
▴ 210
0
votes
3
replies
1.6k
views
cellHTS2 writeReport error
cellHTS2
cellHTS2
updated 17.5 years ago by
rclement
▴ 20 • written 17.5 years ago by
Becky Saunders
▴ 40
0
votes
0
replies
1.6k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics
Cancer
probe
affy
xps
Epigenetics
Cancer
probe
affy
xps
17.5 years ago
Martin Morgan
25k
0
votes
6
replies
2.1k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf
exonmap
xps
cdf
exonmap
xps
updated 17.5 years ago by
cstrato
★ 3.9k • written 17.5 years ago by
De Bondt, An-7114 [PRDBE]
▴ 190
0
votes
0
replies
1.0k
views
error using lumiR * correction
Annotation
lumi
Annotation
lumi
17.5 years ago
Kristen K Dang
▴ 50
0
votes
0
replies
1.2k
views
Problem with makePDpackage in makePlatformDesign and getCdfInfo in affy
cdf
affy
gcrma
oligo
makePlatformDesign
cdf
affy
gcrma
oligo
makePlatformDesign
17.5 years ago
Benjamin Lansdell
▴ 30
0
votes
0
replies
1.1k
views
simpleaffy pairwise.comparison problem
simpleaffy
simpleaffy
17.5 years ago
David Ruau
▴ 190
0
votes
0
replies
799
views
Two Color Array Expression
17.5 years ago
Antosh, Michael
▴ 10
0
votes
0
replies
1.1k
views
Moe430A and Moe430B join
moe430a
moe430b
mouse4302
gcrma
marray
moe430a
moe430b
mouse4302
gcrma
marray
17.5 years ago
Matyas Flemr
▴ 10
0
votes
1
reply
797
views
Glycov3hscdf package
cdf
cdf
updated 17.5 years ago by
James W. MacDonald
68k • written 17.5 years ago by
Harmeet singh
▴ 10
0
votes
1
reply
1.2k
views
aroma.light advice sought
Microarray
limma
aroma.light
Microarray
limma
aroma.light
updated 17.5 years ago by
Henrik Bengtsson
★ 2.4k • written 17.5 years ago by
Iain Gallagher
▴ 930
0
votes
1
reply
2.6k
views
Question about 'annFUN.db' in topGO ....
GO
probe
topGO
GO
probe
topGO
updated 17.5 years ago by
Joern Toedling
▴ 730 • written 17.5 years ago by
ALok
▴ 170
0
votes
2
replies
1.3k
views
arrayQualityMetrics
arrayQualityMetrics
arrayQualityMetrics
updated 17.5 years ago by
audrey
▴ 280 • written 17.5 years ago by
Steve Taylor
▴ 280
0
votes
8
replies
2.8k
views
genefiltering before or after the normalization?
Normalization
genefilter
Normalization
genefilter
updated 17.5 years ago by
Jenny Drnevich
★ 2.0k • written 17.5 years ago by
Abhilash Venu
▴ 340
0
votes
3
replies
1.4k
views
Drosophila tiling array background correction
cdf
probe
oligo
cdf
probe
oligo
updated 17.5 years ago by
Steve Lianoglou
★ 13k • written 17.5 years ago by
Benjamin Lansdell
▴ 30
0
votes
0
replies
956
views
error using lumiR
PROcess
lumi
PROcess
lumi
17.5 years ago
Kristen K Dang
▴ 50
0
votes
3
replies
1.1k
views
Missing summary in HTML reports
arrayQualityMetrics
arrayQualityMetrics
updated 17.5 years ago by
audrey
▴ 280 • written 17.5 years ago by
simona dalle carbonare
▴ 40
0
votes
3
replies
1.0k
views
regular expression for targets
updated 17.5 years ago by
Jenny Drnevich
★ 2.0k • written 17.5 years ago by
darteta001@ikasle.ehu.es
▴ 110
0
votes
2
replies
1.5k
views
EBImage library error
EBImage
EBImage
updated 17.5 years ago by
Tony Chiang
▴ 570 • written 17.5 years ago by
marco zucchelli
▴ 320
0
votes
5
replies
1.9k
views
P-values for tissue specific genes
BRAIN
BRAIN
17.5 years ago
Pascal Gellert
▴ 30
0
votes
3
replies
3.2k
views
species in MsigDB of GSEA
GO
GO
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
Di Wu
▴ 190
0
votes
5
replies
1.7k
views
bovine Annotation package(s)
AnnBuilder
AnnBuilder
updated 17.5 years ago by
Sean Davis
21k • written 17.5 years ago by
Nathan.Watson-Haigh@csiro.au
▴ 210
0
votes
0
replies
1.4k
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
17.5 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
0
votes
1
reply
851
views
Memory problems analyzing 16 chips using arrayQualityMetrics package
arrayQualityMetrics
arrayQualityMetrics
updated 17.5 years ago by
Sean Davis
21k • written 17.5 years ago by
simona dalle carbonare
▴ 40
0
votes
2
replies
1.6k
views
ENTREZ identifiers for PGSEA
GO
lumi
PGSEA
GO
lumi
PGSEA
updated 17.5 years ago by
Dykema, Karl
▴ 90 • written 17.5 years ago by
Sebastien Gerega
▴ 370
0
votes
1
reply
1.6k
views
Fwd: biomaRt column order
Epigenetics
biomaRt
Epigenetics
biomaRt
17.5 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
4
replies
1.2k
views
inquiry for CDF file
updated 17.5 years ago by
Manhong Dai
▴ 200 • written 17.5 years ago by
Lee, Hyeong-min
▴ 10
0
votes
2
replies
1.5k
views
RSQLite error when using AnnotationDbi/SQLForge
oligo
oligo
updated 17.5 years ago by
Diego Diez
▴ 760 • written 17.5 years ago by
Tim Rayner
▴ 270
0
votes
1
reply
1.7k
views
Dealing with multiple probes per gene and multiple locations per probe.
Annotation
GO
probe
affy
Annotation
GO
probe
affy
updated 17.5 years ago by
Sean Davis
21k • written 17.5 years ago by
Nathan Harmston
▴ 100
0
votes
9
replies
2.0k
views
SQLForge and probes that map to multiple genes
Annotation
Annotation
17.5 years ago
Cei Abreu-Goodger
▴ 830
0
votes
0
replies
1.3k
views
ArrayQuality package bug in agQuality function - marray package
Microarray
arrayQuality
Microarray
arrayQuality
17.5 years ago
Marcus Davy
▴ 680
0
votes
2
replies
1.0k
views
how to match tables
Annotation
Annotation
updated 17.5 years ago by
Sean Davis
21k • written 17.5 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
1
reply
963
views
Differences in readExpressionSet between R2.7.1 and R2.5.1 version
updated 17.5 years ago by
Wolfgang Huber
★ 13k • written 17.5 years ago by
daphne mouzaki RI
▴ 10
0
votes
1
reply
807
views
error when using GOstats with AnnBuilder built package
Annotation
GO
GOstats
oligo
Annotation
GO
GOstats
oligo
updated 17.5 years ago by
Marc Carlson
★ 7.2k • written 17.5 years ago by
Johan Lindberg
▴ 270
0
votes
2
replies
830
views
Raw, summarized intensity data from CEL files
updated 17.5 years ago by
Naomi Altman
★ 6.0k • written 17.5 years ago by
Niels Høgslund
▴ 20
0
votes
0
replies
855
views
gene expression using biopsies/mixtures of cell lines
limma
limma
17.5 years ago
Johan Lindberg
▴ 270
1
vote
0
replies
1.1k
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
17.5 years ago
Bettina Kulle Andreassen
▴ 20
0
votes
1
reply
1.9k
views
RMySQL
GO
GO
updated 17.5 years ago by
alex lam RI
▴ 30 • written 17.5 years ago by
Louisa A Rispoli/AS/EXP/UTIA
▴ 160
0
votes
1
reply
942
views
Present/absent probes on miRNA arrays
GO
GO
updated 17.5 years ago by
Mark Cowley
▴ 400 • written 17.5 years ago by
Heidi Dvinge
★ 2.0k
0
votes
1
reply
845
views
marray and limma error with lmFit-reg
Microarray
GO
Microarray
GO
updated 17.5 years ago by
James W. MacDonald
68k • written 17.5 years ago by
sabitha ramanathan
▴ 10
0
votes
1
reply
1.1k
views
Visualization of multiple alignments in bioconductor
Genetics
Visualization
Genetics
Visualization
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
Schraga Schwartz
▴ 10
0
votes
1
reply
711
views
row maximum
updated 17.5 years ago by
Steve Lianoglou
★ 13k • written 17.5 years ago by
Dr Gyorffy Balazs
▴ 320
46,709 results • Page
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Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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