0
votes
0
replies
792
views
minor fitPLM bug in get.psi.code
17.5 years ago Paul Boutros ▴ 340
0
votes
0
replies
760
views
Categories microarray data in functional profiles
Microarray Annotation GO Category Microarray Annotation GO Category
17.5 years ago Marcelo Laia ▴ 450
0
votes
5
replies
1.8k
views
ReadAffy crashes on mac
affy BUS affy BUS
updated 17.5 years ago by ★ 2.4k • written 17.5 years ago by ★ 1.6k
0
votes
0
replies
1.1k
views
Offre speciale
17.5 years ago VoilesNews Magazine ▴ 10
0
votes
1
reply
996
views
Vignette for ShortRead
ShortRead ShortRead
updated 17.5 years ago by 25k • written 17.5 years ago by ▴ 330
0
votes
0
replies
1.1k
views
how to get oligoSnpSet object?
SNP oligo SNP oligo
17.5 years ago Yupu Liang ▴ 50
0
votes
2
replies
1.5k
views
LIMMA - fold change direction?
updated 17.5 years ago by ★ 1.9k • written 17.5 years ago by ▴ 30
0
votes
1
reply
2.2k
views
confusion about nomenclature of illumina annotation packages
BiocViews annotate biocViews BiocViews BiocViews annotate biocViews
updated 17.5 years ago by ▴ 280 • written 17.5 years ago by ▴ 130
0
votes
1
reply
971
views
Affy array layout
updated 17.5 years ago by ★ 6.5k • written 17.5 years ago by ▴ 210
0
votes
3
replies
1.6k
views
cellHTS2 writeReport error
cellHTS2 cellHTS2
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ▴ 40
0
votes
0
replies
1.6k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
17.5 years ago Martin Morgan 25k
0
votes
6
replies
2.1k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf exonmap xps cdf exonmap xps
updated 17.5 years ago by ★ 3.9k • written 17.5 years ago by ▴ 190
0
votes
0
replies
1.0k
views
error using lumiR * correction
Annotation lumi Annotation lumi
17.5 years ago Kristen K Dang ▴ 50
0
votes
0
replies
1.2k
views
Problem with makePDpackage in makePlatformDesign and getCdfInfo in affy
cdf affy gcrma oligo makePlatformDesign cdf affy gcrma oligo makePlatformDesign
17.5 years ago Benjamin Lansdell ▴ 30
0
votes
0
replies
1.1k
views
simpleaffy pairwise.comparison problem
simpleaffy simpleaffy
17.5 years ago David Ruau ▴ 190
0
votes
0
replies
799
views
Two Color Array Expression
17.5 years ago Antosh, Michael ▴ 10
0
votes
0
replies
1.1k
views
Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
17.5 years ago Matyas Flemr ▴ 10
0
votes
1
reply
797
views
Glycov3hscdf package
cdf cdf
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 10
0
votes
1
reply
1.2k
views
aroma.light advice sought
Microarray limma aroma.light Microarray limma aroma.light
updated 17.5 years ago by ★ 2.4k • written 17.5 years ago by ▴ 930
0
votes
1
reply
2.6k
views
Question about 'annFUN.db' in topGO ....
GO probe topGO GO probe topGO
updated 17.5 years ago by ▴ 730 • written 17.5 years ago by ▴ 170
0
votes
2
replies
1.3k
views
arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 17.5 years ago by ▴ 280 • written 17.5 years ago by ▴ 280
0
votes
8
replies
2.8k
views
genefiltering before or after the normalization?
Normalization genefilter Normalization genefilter
updated 17.5 years ago by ★ 2.0k • written 17.5 years ago by ▴ 340
0
votes
3
replies
1.4k
views
Drosophila tiling array background correction
cdf probe oligo cdf probe oligo
updated 17.5 years ago by ★ 13k • written 17.5 years ago by ▴ 30
0
votes
0
replies
956
views
error using lumiR
PROcess lumi PROcess lumi
17.5 years ago Kristen K Dang ▴ 50
0
votes
3
replies
1.1k
views
Missing summary in HTML reports
arrayQualityMetrics arrayQualityMetrics
updated 17.5 years ago by ▴ 280 • written 17.5 years ago by ▴ 40
0
votes
3
replies
1.0k
views
regular expression for targets
updated 17.5 years ago by ★ 2.0k • written 17.5 years ago by ▴ 110
0
votes
2
replies
1.5k
views
EBImage library error
EBImage EBImage
updated 17.5 years ago by ▴ 570 • written 17.5 years ago by ▴ 320
0
votes
5
replies
1.9k
views
P-values for tissue specific genes
BRAIN BRAIN
17.5 years ago Pascal Gellert ▴ 30
0
votes
3
replies
3.2k
views
species in MsigDB of GSEA
GO GO
updated 17.5 years ago by 25k • written 17.5 years ago by ▴ 190
0
votes
5
replies
1.7k
views
bovine Annotation package(s)
AnnBuilder AnnBuilder
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 210
0
votes
0
replies
1.4k
views
annotationTools incorrect use of ortholog
annotationTools annotationTools
17.5 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
0
votes
1
reply
851
views
Memory problems analyzing 16 chips using arrayQualityMetrics package
arrayQualityMetrics arrayQualityMetrics
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 40
0
votes
2
replies
1.6k
views
ENTREZ identifiers for PGSEA
GO lumi PGSEA GO lumi PGSEA
updated 17.5 years ago by ▴ 90 • written 17.5 years ago by ▴ 370
0
votes
1
reply
1.6k
views
Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
17.5 years ago steffen@stat.Berkeley.EDU ▴ 600
0
votes
4
replies
1.2k
views
inquiry for CDF file
updated 17.5 years ago by ▴ 200 • written 17.5 years ago by ▴ 10
0
votes
2
replies
1.5k
views
RSQLite error when using AnnotationDbi/SQLForge
oligo oligo
updated 17.5 years ago by ▴ 760 • written 17.5 years ago by ▴ 270
0
votes
1
reply
1.7k
views
Dealing with multiple probes per gene and multiple locations per probe.
Annotation GO probe affy Annotation GO probe affy
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 100
0
votes
9
replies
2.0k
views
SQLForge and probes that map to multiple genes
Annotation Annotation
17.5 years ago Cei Abreu-Goodger ▴ 830
0
votes
0
replies
1.3k
views
ArrayQuality package bug in agQuality function - marray package
Microarray arrayQuality Microarray arrayQuality
17.5 years ago Marcus Davy ▴ 680
0
votes
2
replies
1.0k
views
how to match tables
Annotation Annotation
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 320
0
votes
1
reply
963
views
Differences in readExpressionSet between R2.7.1 and R2.5.1 version
updated 17.5 years ago by ★ 13k • written 17.5 years ago by ▴ 10
0
votes
1
reply
807
views
error when using GOstats with AnnBuilder built package
Annotation GO GOstats oligo Annotation GO GOstats oligo
updated 17.5 years ago by ★ 7.2k • written 17.5 years ago by ▴ 270
0
votes
2
replies
830
views
Raw, summarized intensity data from CEL files
updated 17.5 years ago by ★ 6.0k • written 17.5 years ago by ▴ 20
0
votes
0
replies
855
views
gene expression using biopsies/mixtures of cell lines
limma limma
17.5 years ago Johan Lindberg ▴ 270
1
vote
0
replies
1.1k
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
17.5 years ago Bettina Kulle Andreassen ▴ 20
0
votes
1
reply
1.9k
views
RMySQL
GO GO
updated 17.5 years ago by ▴ 30 • written 17.5 years ago by ▴ 160
0
votes
1
reply
942
views
Present/absent probes on miRNA arrays
GO GO
updated 17.5 years ago by ▴ 400 • written 17.5 years ago by ★ 2.0k
0
votes
1
reply
845
views
marray and limma error with lmFit-reg
Microarray GO Microarray GO
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Visualization of multiple alignments in bioconductor
Genetics Visualization Genetics Visualization
updated 17.5 years ago by 25k • written 17.5 years ago by ▴ 10
0
votes
1
reply
711
views
row maximum
updated 17.5 years ago by ★ 13k • written 17.5 years ago by ▴ 320
46,709 results • Page 745 of 935
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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