0
votes
3
replies
1.2k
views
subset in XPS
xps xps
updated 17.6 years ago by ★ 3.9k • written 17.6 years ago by ▴ 80
0
votes
2
replies
1.5k
views
PhD position available in Florence, Italy, for metabolomcs studies
17.6 years ago Edoardo Saccenti ▴ 130
2
votes
4
replies
3.7k
views
Your thoughts on Limma Array Weights?
Clustering limma Clustering limma
updated 17.6 years ago by 53k • written 17.6 years ago by ▴ 970
0
votes
1
reply
1.0k
views
Gene Pre-filtering: My Two Shekels
Microarray Microarray
updated 17.6 years ago by ▴ 40 • written 17.6 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Undesirable behavior of limma MArrayLM?
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 970
0
votes
0
replies
785
views
Error in gcrma.engine2 under R 2.7
gcrma gcrma
17.6 years ago ucbtagi@ucl.ac.uk ▴ 20
0
votes
2
replies
1.5k
views
AffyBatch boxplot and histograms
probe probe
17.6 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
0
votes
1
reply
1.1k
views
Gene expression data normalization question---batch effect related
Normalization Normalization
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 640
0
votes
0
replies
1.5k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
17.6 years ago Luc Vallieres ▴ 20
0
votes
0
replies
1.0k
views
two-line labels in GO graphs
17.6 years ago Brian D.Peyser,Ph.D. ▴ 10
0
votes
0
replies
693
views
affyQCReport Border Elements plot
17.6 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
0
votes
4
replies
3.4k
views
using the Limma package with matrix data
limma limma
updated 17.6 years ago by ★ 1.1k • written 17.6 years ago by ▴ 20
0
votes
0
replies
1.1k
views
R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
17.6 years ago Thomas Girke ★ 1.7k
0
votes
5
replies
1.7k
views
Pd info package affy 10K array
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 60
0
votes
0
replies
1.3k
views
Job Opportunity: Statistical Microarray Data Analyst - Switzerland
Microarray GO Microarray GO
17.6 years ago Martin Grindrod ▴ 10
0
votes
0
replies
1.0k
views
Change of default normalization method in lumiN ( lumi package )
Normalization probe lumi Normalization probe lumi
17.6 years ago Pan Du ★ 1.2k
0
votes
1
reply
1.1k
views
going from aroma.affymetrix to limma
Normalization limma Normalization limma
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 30
0
votes
1
reply
2.4k
views
.qcdef file
cdf affyQCReport cdf affyQCReport
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 20
0
votes
2
replies
2.2k
views
row clustering in heatmap.2
GO Clustering GO Clustering
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 410
0
votes
5
replies
1.9k
views
Working with Affymetrix Files
PROcess PROcess
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 30
0
votes
0
replies
1.9k
views
Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
17.6 years ago Mark Cowley ▴ 400
0
votes
3
replies
1.3k
views
Importing data from GEOquery
updated 17.6 years ago by 6.7k • written 17.6 years ago by ▴ 10
0
votes
1
reply
1.2k
views
unexpected change in number of exons from/on mouse exon arrays
Annotation affy Annotation affy
updated 17.6 years ago by ▴ 190 • written 17.6 years ago by ▴ 140
0
votes
0
replies
1.4k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
17.6 years ago Nick Henriquez ▴ 20
0
votes
0
replies
1.2k
views
cross study comparison of cell populations
Cancer affy metaArray Cancer affy metaArray
17.6 years ago Max Kauer ▴ 140
0
votes
1
reply
738
views
baseMapType support for "image" in AnnotationDbi?
Annotation Annotation
updated 17.6 years ago by ★ 7.2k • written 17.6 years ago by ▴ 120
0
votes
6
replies
2.6k
views
Problems building RBGL package
RBGL RBGL
17.6 years ago Rasmus Ory Nielsen ▴ 50
0
votes
8
replies
2.4k
views
Filtering gene list prior to statistical testing
Pathways Pathways
updated 17.6 years ago by ★ 5.5k • written 17.6 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Asking again: AnnotationDbi and GOstats - feed probe names to hyperGTest?
Annotation probe Annotation probe
updated 17.6 years ago by ★ 5.5k • written 17.6 years ago by ▴ 130
0
votes
0
replies
736
views
Measuring Goodness of a Matrix (Gene Expression Profiles)
17.6 years ago Gundala Viswanath ▴ 230
0
votes
0
replies
1.3k
views
Problems installing cghFLasso
17.6 years ago Ng Stanley ▴ 230
0
votes
4
replies
1.6k
views
Converting between old and new annotation packages?
Annotation convert Annotation convert
17.6 years ago Jeff Gentry ★ 3.9k
0
votes
0
replies
767
views
GCRMA-induced correlations? LARGE Change in GCRMA expression values (REPEAT QUESTION)
Microarray Normalization Cancer gcrma Microarray Normalization Cancer gcrma
17.6 years ago Richard Friedman ★ 2.0k
0
votes
3
replies
1.8k
views
affycoretools repost
GO limma affycoretools GO limma affycoretools
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 160
0
votes
2
replies
1.2k
views
Rcurl 0.8-1 update for bioconductor 2.7
updated 17.6 years ago by ★ 1.6k • written 17.6 years ago by ▴ 20
0
votes
1
reply
1.1k
views
hthgu133adim not found
gcrma gcrma
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 180
0
votes
1
reply
988
views
Problem loading Affy
affy affy
updated 17.6 years ago by ★ 6.5k • written 17.6 years ago by ▴ 20
0
votes
1
reply
1.4k
views
affycoretools question
GO limma affycoretools GO limma affycoretools
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 160
0
votes
1
reply
1.4k
views
Normalization Recommendations- severe biological variation (from the digest)
Normalization vsn plier Normalization vsn plier
updated 17.6 years ago by ★ 6.0k • written 17.6 years ago by ▴ 20
0
votes
4
replies
1.3k
views
nsFilter cutoff
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 300
0
votes
1
reply
913
views
R 2.7.1
Cancer Cancer
updated 17.6 years ago by 21k • written 17.6 years ago by ★ 1.9k
0
votes
3
replies
4.0k
views
Cutoff to use for IQR filtering in genefilter
affylmGUI affylmGUI
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 80
0
votes
2
replies
1.6k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 30
0
votes
1
reply
992
views
combineaffybatch and Subsscript out of bound
hgu133a hgu133a
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 430
1
vote
0
replies
801
views
Normalization Recommendations- severe biological variation
Normalization vsn Normalization vsn
17.6 years ago Siobhan A. Braybrook ▴ 60
0
votes
0
replies
917
views
pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R
17.6 years ago JEAN-YVES SGRO ▴ 10
0
votes
3
replies
878
views
Cel processing question
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 930
0
votes
1
reply
2.3k
views
karyogram
idiogram GenomeGraphs idiogram GenomeGraphs
updated 17.6 years ago by ▴ 550 • written 17.6 years ago by ▴ 60
0
votes
2
replies
1.3k
views
EBImage install problems
EBImage EBImage
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ★ 1.1k
0
votes
4
replies
1.6k
views
Using genefilter
genefilter affy limma genefilter affy limma
17.6 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
46,726 results • Page 748 of 935
Recent ...
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening in a clean install
Comment: limpa analysis advice by Gordon Smyth 53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
Comment: limpa analysis advice by SamGG ▴ 360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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