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795
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Course***January 2008 *** San Francisco & New York City *** R/S-Plus Advanced Programming by XLSolutions Corp
18.1 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
0
replies
597
views
10K, 5.0 and 6.0 SNP array analysis with oligo
18.1 years ago
Melanie Bahlo
▴ 10
0
votes
0
replies
376
views
Limma - error with SpotTypes
18.1 years ago
alison waller
▴ 180
0
votes
5
replies
3.0k
views
GSEA and Broad gene sets
Pathways
GSEABase
Pathways
GSEABase
updated 18.1 years ago by
Weiwei Shi
★ 1.2k • written 18.1 years ago by
Brian Hare
▴ 30
0
votes
0
replies
584
views
SpotTypes in Limma
18.1 years ago
Yong Yin
▴ 60
0
votes
1
reply
2.8k
views
pairs(): different ylim , xlim for upper.panel and lower.panel?
ASSIGN
ASSIGN
updated 18.1 years ago by
Wolfgang Huber
★ 13k • written 18.1 years ago by
Stefan Thomsen
▴ 50
0
votes
0
replies
626
views
MICROARRAYS IN R COURSE at Imperial College Dec 2007
18.1 years ago
North, Bernard V
▴ 120
0
votes
1
reply
1.9k
views
How to read a data.frame into limma or marray
Microarray
Normalization
limma
marray
Microarray
Normalization
limma
marray
updated 18.1 years ago by
Saroj Mohapatra
▴ 450 • written 18.1 years ago by
Wolfgang Raffelsberger
▴ 160
0
votes
1
reply
310
views
GO
updated 18.1 years ago by
Marc Carlson
★ 7.2k • written 18.1 years ago by
Salim Charaniya
▴ 20
0
votes
0
replies
1.2k
views
BIRD 2008 Call for workshop proposals
PROcess
PROcess
18.1 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.1k
views
FIESTA viewer: another issue with input files (corrected)
18.1 years ago
Juan C Oliveros Collazos
▴ 40
0
votes
2
replies
1.4k
views
exonmap questions
affy
PROcess
exonmap
affy
PROcess
exonmap
updated 18.1 years ago by
James W. MacDonald
68k • written 18.1 years ago by
Jianping Jin
▴ 890
0
votes
1
reply
937
views
Expanding table to all possible factors
Cancer
Cancer
updated 18.1 years ago by
alex lam RI
▴ 310 • written 18.1 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
385
views
question on lars package
18.1 years ago
James Anderson
▴ 820
0
votes
1
reply
1.1k
views
Applying separate normalization methods to replicate arrays
Normalization
Normalization
updated 18.1 years ago by
Sean Davis
21k • written 18.1 years ago by
Seungwoo Hwang
▴ 80
0
votes
0
replies
1.1k
views
RWebServices problems reported by the "Multiple platform build/check report" for BioC 2.1
RWebServices
RWebServices
18.1 years ago
BBS-noreply@bioconductor.org
▴ 10
0
votes
4
replies
1.8k
views
Limma - error reading in .gpr files
limma
limma
updated 18.1 years ago by
alison waller
▴ 180 • written 18.1 years ago by
michael watson IAH-C
★ 3.4k
0
votes
2
replies
1.3k
views
Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip
Annotation
yeast2
biomaRt
Annotation
yeast2
biomaRt
updated 18.1 years ago by
Marc Carlson
★ 7.2k • written 18.1 years ago by
Guiyuan Lei
▴ 90
0
votes
0
replies
270
views
microarray hybridization
18.1 years ago
McCall, Matthew N.
▴ 10
0
votes
0
replies
558
views
some microscope bridge, but carrot sex
18.1 years ago
Hannah Mccray
▴ 10
0
votes
0
replies
1.3k
views
Limma: doing multiple paired t-tests in one go...
Microarray
GO
Cancer
limma
Microarray
GO
Cancer
limma
18.1 years ago
Gordon Smyth
53k
0
votes
0
replies
916
views
GO graph plotting with some in color
GO
Clustering
graph
PROcess
GO
Clustering
graph
PROcess
18.1 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
933
views
PCA methods for probe level data
probe
affy
convert
probe
affy
convert
18.1 years ago
James W. MacDonald
68k
0
votes
0
replies
525
views
torpedo bee chief umbrella cup vulture
18.1 years ago
Hank Matos
▴ 10
0
votes
0
replies
441
views
aCGH library: problem with impute.lowess
18.1 years ago
Michela Ballardini
▴ 20
0
votes
2
replies
2.4k
views
Limma - Gene set test
limma
limma
updated 18.1 years ago by
Di Wu
▴ 190 • written 18.1 years ago by
Srinivas Iyyer
▴ 600
0
votes
0
replies
411
views
Limma - error reading in .gpr files
18.1 years ago
alison waller
▴ 180
0
votes
0
replies
294
views
PCA methods for probe level data
18.1 years ago
zhi.zhang@syngenta.com
▴ 20
0
votes
2
replies
609
views
probeSetSummary and named vector
18.1 years ago
Ingrid H. G. Østensen
▴ 700
0
votes
0
replies
851
views
New on-line tool to view microarray results
Microarray
Microarray
18.1 years ago
Juan C Oliveros Collazos
▴ 40
0
votes
0
replies
1.2k
views
Oligo package and tiling arrays - PM and MM
cdf
affyio
oligo
BufferedMatrix
cdf
affyio
oligo
BufferedMatrix
18.1 years ago
Naira Naouar
▴ 140
0
votes
1
reply
815
views
marray package: maNorm function with "loes" normalization gives irrreproducable results
updated 18.1 years ago by
Jean Yee Hwa Yang
▴ 130 • written 18.1 years ago by
Rudy van Eijsden
▴ 40
0
votes
0
replies
372
views
Or to spot
18.1 years ago
reload as
▴ 10
0
votes
1
reply
982
views
Fishers Exact test, hyperGTest - GO analysis ... contd..
updated 18.1 years ago by
James W. MacDonald
68k • written 18.1 years ago by
Srinivas Iyyer
▴ 600
0
votes
0
replies
952
views
limma design matrix for two color arrays with common reference
18.1 years ago
zones
▴ 10
0
votes
0
replies
1.5k
views
How to implement Stouffer's method using weights
Microarray
Microarray
18.1 years ago
Scott Ochsner
▴ 300
0
votes
3
replies
2.0k
views
Limma: doing multiple paired t-tests in one go...
limma
limma
18.1 years ago
Groot, Philip de
▴ 630
0
votes
0
replies
897
views
MAGE-TAB tool?
GO
GO
18.1 years ago
Benilton Carvalho
★ 4.3k
0
votes
0
replies
1.4k
views
Fishers Exact test, hyperGTest - GO analysis
18.1 years ago
Srinivas Iyyer
▴ 600
0
votes
0
replies
940
views
error in GSA
18.1 years ago
Mayte Suarez-Farinas
▴ 510
0
votes
0
replies
1.1k
views
Edge color knowing only outgoing node
GO
graph
GO
graph
18.1 years ago
Loren Engrav
★ 1.0k
0
votes
2
replies
1.9k
views
biomaRt getBM errors
Annotation
GO
annotate
AnnBuilder
GOstats
biomaRt
Annotation
GO
annotate
AnnBuilder
updated 18.1 years ago by
James W. MacDonald
68k • written 18.1 years ago by
Nathaniel Street
▴ 10
0
votes
3
replies
1.6k
views
Limma: Nimblegen array data import?
limma
convert
limma
convert
updated 18.1 years ago by
Martin Morgan
25k • written 18.1 years ago by
Dave Berger
▴ 30
0
votes
1
reply
846
views
coerce matrix to aafTable
probe
probe
updated 18.1 years ago by
James W. MacDonald
68k • written 18.1 years ago by
Georg Otto
▴ 510
0
votes
3
replies
1.0k
views
build of bioconductor on R 2.6.1 on mac os 10.5
updated 18.1 years ago by
Hervé Pagès
16k • written 18.1 years ago by
Jason J. Evans
▴ 10
0
votes
1
reply
909
views
GCRMA background correction for a subset of genes
affy
gcrma
affy
gcrma
updated 18.1 years ago by
lgautier@altern.org
▴ 950 • written 18.1 years ago by
odlc@uchicago.edu
▴ 30
0
votes
2
replies
1.3k
views
Limma - write table??
updated 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.1 years ago by
alison waller
▴ 180
0
votes
1
reply
825
views
One directional spatial normalisation for microarray data
marray
marray
updated 18.1 years ago by
Henrik Bengtsson
★ 2.4k • written 18.1 years ago by
michael watson IAH-C
★ 3.4k
0
votes
5
replies
619
views
Using another array system but affy
18.1 years ago
Erika
▴ 30
0
votes
0
replies
1.1k
views
custom affylmGUI menus
Normalization
vsn
affylmGUI
Normalization
vsn
affylmGUI
18.1 years ago
Stefanie De Bodt
▴ 10
46,712 results • Page
769 of 935
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Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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53k
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▴ 30
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to
Hervé Pagès
16k
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