0
votes
6
replies
1.2k
views
www site problem
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 270
0
votes
3
replies
1.2k
views
base of B-value log in Limma - still not sure
limma limma
updated 19.7 years ago by 53k • written 19.7 years ago by ▴ 230
0
votes
0
replies
1.2k
views
[COURSE] CSAMA'06, few places available
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
19.7 years ago stefano iacus ▴ 430
0
votes
0
replies
918
views
problem with moe430a version 1.12.0?
hgu133a hgu133plus2 moe430a moe430b rae230b probe hgu133a hgu133plus2 moe430a moe430b
19.7 years ago MARIA STALTERI ▴ 160
0
votes
4
replies
1.6k
views
Communicating gene-probe relationships to sam
SNP Biobase siggenes SNP Biobase siggenes
19.7 years ago Charles Crane ▴ 30
0
votes
4
replies
1.8k
views
probe --> probe set mapping in CDF library files
cdf probe altcdfenvs cdf probe altcdfenvs
19.7 years ago michael driscoll ▴ 30
0
votes
1
reply
1.6k
views
How does BioC map from Probe ID to Entrez Gene?
Annotation GO probe affy Annotation GO probe affy
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 320
0
votes
0
replies
454
views
Insterest in this project
19.7 years ago Justin Zhang ▴ 30
0
votes
1
reply
1.5k
views
reference design
limma limmaGUI oligo limma limmaGUI oligo
updated 19.7 years ago by ★ 6.0k • written 19.7 years ago by ▴ 30
0
votes
1
reply
784
views
problem with GOLOCUSID2GO environment in the GO library
GO GO
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 80
0
votes
1
reply
1.1k
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph RBGL graph RBGL
updated 19.7 years ago by ▴ 50 • written 19.7 years ago by ★ 7.4k
0
votes
0
replies
703
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph graph
19.7 years ago Dan Bebber ▴ 50
0
votes
0
replies
629
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph graph
19.7 years ago Dan Bebber ▴ 10
0
votes
1
reply
472
views
estimation of number of False positive in limma
updated 19.7 years ago by ★ 2.2k • written 19.7 years ago by ▴ 430
0
votes
0
replies
685
views
microarray conditional regression
limma limma
19.7 years ago Giorgi, Elena ▴ 30
0
votes
2
replies
1.1k
views
Normalization of Affymetrix data using the house keeping controls.
Normalization Normalization
19.7 years ago Khan, Sohail ▴ 490
0
votes
0
replies
682
views
Sam always wants more observations
probe Biobase affy affyPLM probe Biobase affy affyPLM
19.7 years ago Charles Crane ▴ 30
0
votes
0
replies
1.1k
views
Limma and fitFDist()
Microarray limma Microarray limma
19.7 years ago Gordon Smyth 53k
0
votes
1
reply
907
views
Help with the zero.weights option of plotMA3by2 function in Limma package
limma limma
updated 19.7 years ago by 53k • written 19.7 years ago by ▴ 20
0
votes
2
replies
1.2k
views
problem with CoCiteStats in bioC 1.8
cdf reposTools affy CoCiteStats affyio cdf reposTools affy CoCiteStats affyio
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 890
0
votes
0
replies
1.5k
views
parameterization or contrast matrix?
limma limmaGUI oligo limma limmaGUI oligo
19.7 years ago bzzandrew@interfree.it ▴ 30
0
votes
0
replies
696
views
Update getBioC for R 2.3 needed ?
Cancer Cancer
19.7 years ago Thierry Sengstag ▴ 20
0
votes
0
replies
2.2k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
19.7 years ago Birgit Hauer ▴ 30
0
votes
0
replies
720
views
Returned mail: Data format error
19.7 years ago gboyd@expita.com ▴ 10
0
votes
1
reply
738
views
question about reliability and toptable
updated 19.7 years ago by ▴ 300 • written 19.7 years ago by ▴ 50
0
votes
0
replies
859
views
justGCRMA error in BioC 1.8
cdf affy gcrma matchprobes cdf affy gcrma matchprobes
19.7 years ago echang4@life.uiuc.edu ▴ 110
0
votes
0
replies
1.5k
views
PhD Student Position in Statistics on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
19.7 years ago Ivo Kwee ▴ 30
0
votes
0
replies
1.5k
views
Job announcement: Virginia Commonwealth University
19.7 years ago Kellie J. Archer, Ph.D. ▴ 120
0
votes
0
replies
1.2k
views
FDA soliciting proposals to analyze gene expression datasets
Microarray Pharmacogenomics PROcess Microarray Pharmacogenomics PROcess
19.7 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
998
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
19.7 years ago Justin Borevitz ▴ 170
0
votes
0
replies
773
views
Affymetrix Normalization based on the controls?
Normalization Normalization
19.7 years ago Khan, Sohail ▴ 490
0
votes
1
reply
406
views
custom cdf files with just.gcrma
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 20
0
votes
0
replies
409
views
help on reliability and toptable, please
19.7 years ago Di Wu ▴ 10
0
votes
0
replies
272
views
help, reliability and toptable
19.7 years ago Di Wu ▴ 10
0
votes
4
replies
1.4k
views
a just.gcrma question
gcrma gcrma
updated 19.7 years ago by ▴ 200 • written 19.7 years ago by ▴ 890
0
votes
2
replies
1.6k
views
biomaRt error
biomaRt biomaRt
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 510
0
votes
5
replies
1.7k
views
GCRMA Fold Change
probe gcrma PROcess probe gcrma PROcess
updated 19.7 years ago by ★ 2.2k • written 19.7 years ago by ▴ 20
0
votes
0
replies
899
views
Memory issues with limma and ImaGen file import
limma limma
19.7 years ago Gordon Smyth 53k
0
votes
5
replies
1.4k
views
NAMESPACES, export, and unit tests
gaggle gaggle
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 40
0
votes
0
replies
925
views
timecourse pkg question
TimeCourse convert timecourse TimeCourse convert timecourse
19.7 years ago aaron.j.mackey@gsk.com ▴ 70
0
votes
1
reply
1.2k
views
When to treat technical reps as biological reps? WAS:Re: 2x2 factorial loop without common reference (pool)
Microarray limma Microarray limma
19.7 years ago Gordon Smyth 53k
0
votes
0
replies
1000
views
error running the example of the widget function in the widgetTools library
widgetTools widgetTools
19.7 years ago Hervé Pagès 16k
0
votes
0
replies
469
views
CFP: Distributed, High-Performance and Grid Computing in Computational Biology
19.7 years ago Hershel Safer ▴ 60
0
votes
0
replies
968
views
Memory issues with limma and ImaGen file import
limma limma
19.7 years ago Gordon Smyth 53k
0
votes
1
reply
948
views
error running the example of the widget function in the widgetTools library
widgetTools widgetTools
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 80
0
votes
0
replies
988
views
Memory issues with limma and ImaGen file import
limma limma
19.7 years ago Christian Spieth ▴ 10
0
votes
3
replies
1.1k
views
invariant set normalisation
updated 19.7 years ago by ▴ 270 • written 19.7 years ago by ▴ 10
0
votes
8
replies
4.0k
views
Problem installing hexbin?
hexbin hexbin
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 30
0
votes
0
replies
1.2k
views
"One Way ANOVA" with limma
limma limma
19.7 years ago Max Kauer ▴ 40
0
votes
0
replies
1.2k
views
What's new in the graph package
graph graph
19.7 years ago Seth Falcon ★ 7.4k
46,704 results • Page 825 of 935
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Comment: ATACseq rudimentary questions by 4747 • 0
Thank you so much for being detailed, all makes sense now
Answer: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…
Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Votes
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
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