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RMAGEML: importMAGEOM returns nil pointer
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updated 19.9 years ago by ▴ 420 • written 19.9 years ago by ▴ 10
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19.9 years ago Colin A. Smith ▴ 220
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LIMMA help: how to choose correct weight for flagged spots??
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19.9 years ago daniela.marconi@libero.it ▴ 100
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degraded RNA and background correction
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19.9 years ago Jenny Drnevich ★ 2.2k
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All the functions in a BioC package
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 490
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19.9 years ago Ron Ophir ▴ 270
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19.9 years ago michael watson IAH-C ★ 3.4k
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(no subject)
19.9 years ago Alessandra De Riva ▴ 10
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updated 19.9 years ago by ▴ 110 • written 19.9 years ago by ★ 2.3k
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updated 19.9 years ago by ▴ 130 • written 19.9 years ago by ▴ 10
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Normalizing by Within Condition - a bad idea
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updated 19.9 years ago by ★ 6.5k • written 19.9 years ago by ★ 6.0k
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19.9 years ago Georg Otto ▴ 510
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Limma: can't use plotPrintTipLoess() with split.screen()
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19.9 years ago michael watson IAH-C ★ 3.4k
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Explaining limma, design matrices and linear models to non statisticians
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updated 19.9 years ago by ▴ 70 • written 19.9 years ago by ★ 3.4k
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makePlatformDesign for 10k Array
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AnnBuilder error
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updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 510
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19.9 years ago Gordon Smyth 53k
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19.9 years ago daniela.marconi@libero.it ▴ 100
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updated 19.9 years ago by ▴ 90 • written 19.9 years ago by ★ 1.5k
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19.9 years ago Wolfgang Huber ★ 13k
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updated 19.9 years ago by 21k • written 19.9 years ago by ▴ 110
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19.9 years ago Gordon Smyth 53k
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updated 19.9 years ago by ▴ 510 • written 19.9 years ago by ★ 2.2k
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updated 19.9 years ago by ★ 6.0k • written 19.9 years ago by ▴ 890
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duplicate cor?
19.9 years ago Jianping Jin ▴ 890
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Filter on Fold Change
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updated 19.9 years ago by ★ 1.0k • written 19.9 years ago by ▴ 110
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updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 30
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updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 20
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biomaRt xMLTreeParse error
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19.9 years ago david hot ▴ 20
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20.0 years ago • updated 19.9 years ago Kaustubh Patil ▴ 110
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19.9 years ago Kaustubh Patil ▴ 110
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install package from local path with reposTools
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updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 30
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19.9 years ago Gordon Smyth 53k
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19.9 years ago Gordon Smyth 53k
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limma anova table?
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updated 19.9 years ago by ▴ 890 • written 19.9 years ago by 53k
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updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 110
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updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ★ 1.4k
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19.9 years ago Christos Hatzis ▴ 110
0
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updated 19.9 years ago by ★ 1.2k • written 19.9 years ago by ▴ 360
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19.9 years ago Amy Mikhail ▴ 460
46,726 results • Page 832 of 935
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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