0
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2
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1.0k
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ctc package!
updated 23.0 years ago by ★ 3.9k • written 23.0 years ago by ▴ 80
0
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1
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782
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Exporting normalized microarray data
Microarray Microarray
updated 23.0 years ago by ★ 5.5k • written 23.0 years ago by ▴ 10
0
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2
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1.5k
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phenodata - rtfm
Annotation Cancer Annotation Cancer
updated 23.0 years ago by ▴ 220 • written 23.0 years ago by ★ 5.5k
0
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1
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792
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how to install bioconductor in Windows Operating System?
updated 23.0 years ago by ★ 3.9k • written 23.0 years ago by ▴ 10
0
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0
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1.1k
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RE: PCA plots
Microarray GO Microarray GO
23.0 years ago Jeff Sorenson ▴ 70
0
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3
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2.0k
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PCA plots
Cancer Cancer
updated 23.0 years ago by ★ 5.5k • written 23.0 years ago by ▴ 120
0
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9
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How to do k-fold validation using SVM
updated 23.0 years ago by ★ 1.0k • written 23.0 years ago by ▴ 30
0
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0
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703
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RE: Bioconductor digest, Vol 1 #210 - 10 msgs
23.0 years ago Jeff Sorenson ▴ 70
0
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0
replies
796
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Widget option enabled:Thank you
PROcess PROcess
23.0 years ago Tapan Mehta ▴ 270
0
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4
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1.7k
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Enabling the widget option
tkWidgets affy widgetTools tkWidgets affy widgetTools
23.0 years ago Tapan Mehta ▴ 270
0
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1
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1.2k
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problem reading yeast data
Microarray Yeast cdf Microarray Yeast cdf
updated 23.0 years ago by ★ 2.3k • written 23.0 years ago by ▴ 10
0
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2
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RMA results
affy GeneSpring affy GeneSpring
updated 23.0 years ago by ▴ 70 • written 23.0 years ago by ▴ 100
0
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1
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1.2k
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importing MAGE-ML files
Microarray Microarray
updated 23.0 years ago by 6.7k • written 23.0 years ago by ▴ 30
0
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2
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1.3k
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AnnBuilder script buildDPkg.R
rgu34a rgu34a
updated 23.0 years ago by ★ 2.9k • written 23.0 years ago by ▴ 40
0
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3
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1.9k
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'tcltk' not available error
Biobase affy Biobase affy
updated 23.0 years ago by ★ 3.9k • written 23.0 years ago by ▴ 10
0
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3
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1.7k
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dilution and spikein data
updated 23.0 years ago by ▴ 190 • written 23.0 years ago by ▴ 640
0
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3
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1.2k
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MAS 5.0
updated 23.0 years ago by ▴ 60 • written 23.0 years ago by ▴ 20
0
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2
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1.2k
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RE: Bioconductor digest, Vol 1 #208 - 2 msgs
Cancer Cancer
updated 23.0 years ago by ▴ 640 • written 23.0 years ago by ▴ 10
0
votes
2
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1.3k
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problem
affy affy
updated 23.0 years ago by ▴ 640 • written 23.0 years ago by ▴ 10
0
votes
0
replies
882
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(no subject)
23.0 years ago Jason Skelton ▴ 510
0
votes
1
reply
947
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Filtering and Multiple Testing
multtest multtest
updated 23.0 years ago by ★ 5.5k • written 23.0 years ago by ▴ 70
0
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0
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1.0k
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protien and peptide mass spectrometry
genefilter PROcess genefilter PROcess
23.0 years ago Nicholas Lewin-Koh ▴ 430
0
votes
3
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1.7k
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Phylogenetic inference
Sequencing Sequencing
updated 23.0 years ago by ▴ 530 • written 23.0 years ago by ▴ 10
0
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2
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1.2k
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protein and peptide mass spectrometry
updated 23.0 years ago by ★ 5.5k • written 23.0 years ago by ▴ 90
0
votes
2
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2.1k
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Importing data into Bioconductor
convert convert
23.0 years ago Fernando Henrique Ferraz P da Rosa ▴ 20
0
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4
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1.7k
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mas 5.0 presence calls
Microarray Normalization Cancer affy vsn Microarray Normalization Cancer affy vsn
updated 23.0 years ago by ▴ 220 • written 23.0 years ago by ★ 1.4k
0
votes
0
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normalizing affy chips with vsn
Normalization affy vsn Normalization affy vsn
23.0 years ago Oliver Hartmann ▴ 70
0
votes
3
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1.5k
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problem with expresso()
affy vsn affy vsn
updated 23.0 years ago by ★ 13k • written 23.0 years ago by ▴ 70
0
votes
0
replies
988
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invarianset problem
23.0 years ago Laurent Gautier ★ 2.3k
0
votes
1
reply
667
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how to use the packages.
affy affy
updated 23.0 years ago by ★ 3.9k • written 23.0 years ago by ▴ 10
0
votes
2
replies
1.9k
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gls from nlme package not compatible with methods package
Microarray Genetics Microarray Genetics
updated 23.0 years ago by ▴ 180 • written 23.0 years ago by ▴ 1000
0
votes
0
replies
752
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AnnBuilder version 1.0.2 requires package RPgSQL
23.0 years ago Phguardiol@aol.com ▴ 720
0
votes
0
replies
739
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How to setup Bioconductor
23.0 years ago Markus Matthias Haußner ▴ 20
0
votes
1
reply
936
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expresso mas problem
updated 23.0 years ago by ★ 2.3k • written 23.0 years ago by ★ 1.4k
0
votes
0
replies
778
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Permission Request
GO GO
23.0 years ago Momoko Takahashi ▴ 10
0
votes
0
replies
802
views
Fw: missing doc. pages <<--- neglect this. Sorry
23.0 years ago Sek Won Kong, M.D. ▴ 40
0
votes
0
replies
752
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missing doc. pages
23.0 years ago Sek Won Kong, M.D. ▴ 40
0
votes
0
replies
837
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minor affy vignette doc error
23.0 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
1.1k
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Bioconductor 1..6.1: espresso problem.
updated 23.0 years ago by ★ 2.3k • written 23.0 years ago by ▴ 40
0
votes
0
replies
913
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recognizing *.cdf file
hgu95a cdf probe hgu95a cdf probe
23.0 years ago Janet Holt ▴ 10
0
votes
2
replies
2.1k
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BioConductor Affy package
ROC reposTools affy ROC reposTools affy
23.0 years ago Susan J. Miller ▴ 20
0
votes
2
replies
1.3k
views
Error in rma(data) : couldn't find function "notes" when running rma
affy affy
updated 23.1 years ago by ▴ 640 • written 23.1 years ago by ▴ 10
0
votes
0
replies
903
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Re: contents of affy package [was Re: hi]
Normalization affy Normalization affy
23.1 years ago Douglas Bates ▴ 180
0
votes
1
reply
939
views
getBioC failure
Biobase reposTools Biobase reposTools
updated 23.1 years ago by ★ 3.9k • written 23.1 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Error message when running install script.
Biobase reposTools Biobase reposTools
updated 23.1 years ago by ★ 2.9k • written 23.1 years ago by ▴ 40
0
votes
1
reply
1.0k
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vsn / rma
Genetics vsn Genetics vsn
updated 23.1 years ago by ★ 13k • written 23.1 years ago by ▴ 30
0
votes
1
reply
851
views
o
annotate annotate
updated 23.1 years ago by ★ 2.9k • written 23.1 years ago by ▴ 10
0
votes
1
reply
1.0k
views
bioconductor repository
updated 23.1 years ago by ★ 3.9k • written 23.1 years ago by ▴ 40
0
votes
0
replies
1.6k
views
Contribution - Technical Flow Slides
23.1 years ago Sundaram, Shyam NIH/CIT ▴ 110
0
votes
1
reply
998
views
affy batch questions
hgu133a hgu133b hgu133a hgu133b
updated 23.1 years ago by ★ 13k • written 23.1 years ago by ▴ 20
46,717 results • Page 929 of 935
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Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 20
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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