5
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6
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2.8k
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
updated 11 hours ago by 65k • written 2.3 years ago by • 0
0
votes
3
replies
94
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 17 hours ago by ★ 4.1k • written 1 day ago by • 0
0
votes
3
replies
57
views
Once again a "Model matrix not full rank"
DESeq2 design coldata
6 hours ago arfranco ▴ 130
0
votes
2
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150
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 10 days ago by • 0
0
votes
2
replies
90
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
1 day ago • updated 12 hours ago Ian D. ▴ 70
0
votes
2
replies
50
views
DESeq2 v1.35.0
DESeq2
updated 11 hours ago by 41k • written 11 hours ago by • 0
0
votes
2
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71
views
Deseq2 and Normalization of RNA sequencing data
DESeq2
1 day ago • updated 4 hours ago kcarey • 0
0
votes
1
reply
43
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 4 hours ago by 50k • written 9 hours ago by • 0
0
votes
1
reply
30
views
Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
written 17 hours ago by • 0
0
votes
1
reply
117
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
updated 20 minutes ago by 50k • written 8 hours ago by ▴ 10
0
votes
1
reply
37
views
NEED FOR NESSASORY HELP
RNASeqData edgeR
updated 4 hours ago by 50k • written 9 hours ago by • 0
0
votes
0
replies
14
views
flowStats for CyTOF
flowStats
10 hours ago tholmes • 0
0
votes
0
replies
15
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
12 hours ago Ian D. ▴ 70
0
votes
0
replies
19
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
12 hours ago yvonneh • 0
14 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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