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21
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Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
12 hours ago
Tim Barry
• 0
0
votes
2
replies
53
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
updated 3 hours ago by
blackwidowzzz
• 0 • written 16 hours ago by
landenshanie
▴ 40
0
votes
0
replies
16
views
Job:
Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod
Evolution
QuantitativeTrailLocus
Genetics
JobPosting
22 hours ago
pierre.devillemereuil
• 0
1
vote
1
reply
56
views
Control group between 2 batches have different expression in RNAseq data
BatchQC
BatchEffect
rnaseqGene
Normalization
updated 22 hours ago by
James W. MacDonald
66k • written 1 day ago by
Đình Vinh
• 0
1
vote
1
reply
142
views
How to remove batch effect to combine RNAseq data from 2 different experiments?
BatchQC
BatchEffect
RNASeq
updated 22 hours ago by
James W. MacDonald
66k • written 1 day ago by
ttt
• 0
1
vote
3
replies
103
views
LRT, more than two conditions and pairwise comparisons
DESeq2
updated 17 hours ago by
James W. MacDonald
66k • written 1 day ago by
boczniak767
▴ 720
0
votes
2
replies
68
views
How to run allelic imbalance in apeglm
apeglm
updated 19 hours ago by
Michael Love
42k • written 1 day ago by
euge.eugenio
▴ 20
1
vote
2
replies
97
views
Subsetting RNAseq data | voomaByGroup()
limma
3 days ago • updated 22 hours ago
Anna
• 0
0
votes
1
reply
64
views
ERROR; return code from pthread_create() is 22
affy
updated 21 hours ago by
James W. MacDonald
66k • written 3 days ago by
pickingastar
• 0
2
votes
4
replies
185
views
DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
updated 19 hours ago by
Michael Love
42k • written 3 days ago by
shaunpeterson
• 0
0
votes
6
replies
558
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
4 days ago • updated 20 hours ago
Ken C
• 0
0
votes
2
replies
740
views
Help with ENmix readidat
ENmix
IlluminaHumanMethylationEPICmanifest
updated 17 hours ago by
James W. MacDonald
66k • written 2.0 years ago by
Daphna
• 0
7
votes
40
replies
5.8k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 3 hours ago by
Johannes Rainer
★ 2.0k • written 5.5 years ago by
Guido Hooiveld
★ 4.0k
13 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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