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conumee with Infinium MethylationEPIC v2.0
MethylationEPICv2.0
conumee
updated 1 day ago by
sgomez
• 0 • written 14 months ago by
luca.s
▴ 50
0
votes
0
replies
56
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
6 days ago • updated 5 days ago
abhisek001
• 0
0
votes
4
replies
269
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq
Rsubread
updated 4 days ago by
Wei Shi
★ 3.6k • written 5 days ago by
atan
• 0
0
votes
0
replies
39
views
conumee with Infinium MethylationEPIC v2.0
conumee
3 days ago
Maximus
• 0
0
votes
0
replies
33
views
gmapR source package contains x86_64 binaries
gmapR
1 day ago
Tom Lin
• 0
0
votes
1
reply
123
views
Error in render R qmd document (could not find function "process")
quantro
updated 1 day ago by
ATpoint
★ 4.2k • written 2 days ago by
Chutian
• 0
0
votes
2
replies
109
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
DESeq2
single-cell
scRNA
Pseudobulk
updated 1 day ago by
Guido Hooiveld
★ 4.0k • written 2 days ago by
Sara
• 0
0
votes
2
replies
173
views
Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
Biostrings
1 day ago • updated 13 hours ago
Ali Osman
• 0
0
votes
0
replies
20
views
LRT, pairwise comparisons and p-value adjustment
DESeq2
5 hours ago
boczniak767
▴ 720
0
votes
7
replies
378
views
ChAMP installation issue
Cha
ChAMP
updated 6 days ago by
James W. MacDonald
66k • written 15 days ago by
e1271094
• 0
0
votes
7
replies
200
views
Cannot install oligo on Fedora
oligo
source
Install
4 days ago • updated 5 hours ago
Guido Hooiveld
★ 4.0k
11 results • Page
1 of 1
Recent ...
Replies
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Answer: ChAMP not available for bioconductor 3.19
by
shepherl
3.9k
See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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