Bioconductor 10x

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by xingxd16 ▴ 20

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 3.8 years ago by Michael Love 42k • written 3.8 years ago by vincent.croset ▴ 20

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago • updated 20 months ago Peter Hickey ▴ 740

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2.4k

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10x scrna-seq

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by jma1991 ▴ 70

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DropletUtils emptyDrops 10x

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by Peter Hickey ▴ 740

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217

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CellRanger emptyDrops scRNAseq 10X

7 weeks ago rocanja ▴ 60

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637

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RNAseq 10X

13 months ago wt215 • 0

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679

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SingleCell emptyDrops 10X

updated 12 months ago by Peter Hickey ▴ 740 • written 12 months ago by sandra.garces.19 • 0

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Comment: Cannot connect to ExperimentHub server by Jiayu • 0

Many thanks and it also resolved the same issue for me!

Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

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Answer: Cannot connect to ExperimentHub server

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

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Popular Question to Gyan Prakash Mishra ▴ 10