Showing : ASSIGN • reset
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mogene10stprobeset.db error
Normalization ASSIGN Normalization ASSIGN
updated 15.3 years ago by 6.7k • written 15.4 years ago by ▴ 170
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1
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1.5k
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loop over IRanges spaces
Coverage convert rtracklayer ASSIGN Coverage convert rtracklayer ASSIGN
updated 15.5 years ago by ★ 11k • written 15.5 years ago by ▴ 60
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983
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single channel analysis
Annotation Normalization limma ASSIGN Annotation Normalization limma ASSIGN
updated 15.5 years ago by ▴ 860 • written 15.5 years ago by ▴ 740
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2
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1.2k
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single channel analysis
Annotation ASSIGN Annotation ASSIGN
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 860
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1
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1.2k
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 15.6 years ago by 68k • written 15.6 years ago by ★ 2.0k
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3
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1.3k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.8 years ago by ★ 6.0k • written 15.8 years ago by ▴ 810
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1
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1.9k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 15.8 years ago by ★ 13k • written 15.8 years ago by 21k
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1
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1.4k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.8 years ago by ★ 6.0k • written 15.8 years ago by ▴ 810
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1.1k
views
Any way to ouput the reordered gene list from heatmap.2()?
Cancer made4 ASSIGN Cancer made4 ASSIGN
15.8 years ago Steve Lianoglou ★ 13k
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1
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1.1k
views
Help on ROCR analysis
Genetics ASSIGN Genetics ASSIGN
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 80
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1
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1.6k
views
Changes in siggenes?
Prostate hgu133a2 probe affy siggenes ASSIGN Prostate hgu133a2 probe affy siggenes
updated 15.8 years ago by ▴ 900 • written 15.8 years ago by ▴ 10
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929
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Help on ROC analysis
Genetics MEDME ASSIGN Genetics MEDME ASSIGN
15.8 years ago Susan Bosco ▴ 80
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1.3k
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Limma- deleting control probes from differential expression analysis
Transcription ASSIGN Transcription ASSIGN
15.9 years ago Neel Aluru ▴ 460
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799
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Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism GOstats topGO ASSIGN Annotation GO Organism GOstats topGO ASSIGN
16.4 years ago Pengcheng Yang ▴ 40
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2.1k
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism ASSIGN Annotation GO Organism ASSIGN
updated 16.4 years ago by ▴ 40 • written 16.4 years ago by ▴ 340
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785
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Fwd: Re: which package can do GSEA for no model organism
GO Organism ASSIGN GO Organism ASSIGN
16.4 years ago Naomi Altman ★ 6.0k
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2
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1.1k
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How to permute the CEL files
ASSIGN ASSIGN
updated 16.4 years ago by 25k • written 16.4 years ago by ▴ 840
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11
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2.6k
views
...another question about using weights on microarray analysis
Microarray limma ASSIGN Microarray limma ASSIGN
16.7 years ago Erika Melissari ▴ 250
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982
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array/spot quality control procedure on gene expression microarrays: What weights?
Normalization ASSIGN Normalization ASSIGN
16.7 years ago Erika Melissari ▴ 250
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1
reply
1.0k
views
reference argument in limma factorial design
Microarray ASSIGN Microarray ASSIGN
updated 16.8 years ago by ★ 6.0k • written 16.8 years ago by ▴ 100
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2
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1.2k
views
reference argument in limma factorial design
Microarray limma ASSIGN Microarray limma ASSIGN
updated 16.8 years ago by ★ 6.0k • written 16.8 years ago by 53k
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1
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1.6k
views
Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 16.8 years ago by ▴ 30 • written 16.8 years ago by ▴ 90
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3
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2.8k
views
heatmap.2
ASSIGN ASSIGN
updated 16.9 years ago by 21k • written 16.9 years ago by ▴ 10
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1
reply
1.3k
views
FW: Request for the assistance to use MEDME
Normalization Organism probe MEDME cycle ASSIGN Normalization Organism probe MEDME cycle
updated 16.9 years ago by ▴ 30 • written 16.9 years ago by ▴ 90
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0
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616
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Integer index for mitochondrial chromosome?
ASSIGN ASSIGN
17.5 years ago Henrik Bengtsson ★ 2.4k
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1
reply
777
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Limma: import files with genes missing
Annotation Cancer probe limma ASSIGN Annotation Cancer probe limma ASSIGN
17.6 years ago Gordon Smyth 53k
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1
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2.7k
views
pairs(): different ylim , xlim for upper.panel and lower.panel?
ASSIGN ASSIGN
updated 17.9 years ago by ★ 13k • written 17.9 years ago by ▴ 50
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2
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1000
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modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 18.0 years ago by ▴ 120 • written 18.0 years ago by ▴ 10
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0
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1.2k
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automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
18.0 years ago Gordon Smyth 53k
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0
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1.0k
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automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
18.0 years ago Amin Moghaddasi ▴ 130
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1
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1.6k
views
simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 18.1 years ago by ★ 1.1k • written 18.1 years ago by ▴ 50
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1.6k
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Help with lm and predict
ASSIGN ASSIGN
18.2 years ago Nathan Haigh ▴ 120
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0
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969
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Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
18.3 years ago Aedin Culhane ▴ 510
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2
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2.4k
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Outputting dendrogram with large numbers of genes without losing resolution
ASSIGN ASSIGN
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 40
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1
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1.2k
views
Array normalisation with Limma: would this be reasonable?
ASSIGN ASSIGN
18.9 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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2
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1.3k
views
Single Channel Approach for Agilent Arrays
limma ASSIGN limma ASSIGN
updated 19.1 years ago by ★ 6.0k • written 19.1 years ago by ▴ 100
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1.0k
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Top gene list
limma ASSIGN limma ASSIGN
19.2 years ago daphne mouzaki RI ▴ 80
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1
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1.1k
views
[R-SIG-Mac] trouble running Bioconductor
limma BUS ASSIGN limma BUS ASSIGN
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 430
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0
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938
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vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.4 years ago Wolfgang Huber ★ 13k
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861
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vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.4 years ago Alessio Venier ▴ 40
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2
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1.7k
views
Limma: Extract genes from decideTests result
limma ASSIGN limma ASSIGN
updated 19.7 years ago by ▴ 100 • written 19.7 years ago by ▴ 360
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947
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R from Perl
ASSIGN ASSIGN
19.9 years ago Duncan Temple Lang ▴ 110
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0
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1.1k
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Spot Quality Weights for Agilent arrays
ASSIGN ASSIGN
20.2 years ago Francesca Guana ▴ 10
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3
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1.8k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
20.3 years ago Brooke-Powell, Elizabeth ▴ 170
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4
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1.4k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 20.3 years ago by ▴ 170 • written 20.3 years ago by 53k
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3
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1.5k
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Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 20.5 years ago by ▴ 760 • written 20.5 years ago by 53k
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0
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1.4k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
20.6 years ago Diego Diez ▴ 760
0
votes
3
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1.4k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 120
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0
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1.1k
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.7 years ago Jain, Nitin ▴ 70
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votes
0
replies
986
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.7 years ago Harry Hurd ▴ 60
123 results • Page 2 of 3
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Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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