Bioconductor Alternative Splicing

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836

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.1 years ago noahhelton98 ▴ 20

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1.1k

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sgseq alternative splicing rna seq

updated 3 months ago by Sara • 0 • written 5.0 years ago by 116100016 • 0

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952

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rna seq SGSeq Alternative splicing

updated 5.1 years ago by Leonard Goldstein ▴ 260 • written 5.1 years ago by 116100016 • 0

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1.2k

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aspli readCounts rna-seq alternative splicing AS

5.7 years ago fernandalpcosta ▴ 10

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1000

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R alternative splicing ASpli AsDiscover

5.9 years ago abdul rawoof ▴ 60

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1.1k

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rnaseq alternative splicing ASpli

6.0 years ago nicolas.guyon2 • 0

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1.7k

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rna-seq alternative splicing SGSeq

6.0 years ago andrea.bast • 0

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1.4k

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maser R rMATs alternative splicing

6.2 years ago Reza • 0

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1.5k

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limma rna-seq alternative splicing

updated 7.1 years ago by Gordon Smyth 51k • written 7.1 years ago by lirongrossmann ▴ 80

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1.3k

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limma voom alternative splicing

8.7 years ago osa.zuta ▴ 40

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3.0k

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sgseq splicing alternative splicing

updated 8.7 years ago by Leonard Goldstein ▴ 260 • written 8.7 years ago by vakul.mohanty ▴ 20

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1.2k

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deseq2 dexseq alternative splicing

updated 8.9 years ago by Michael Love 42k • written 9.0 years ago by sahiilseth • 0

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2.4k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

9.1 years ago Fahmi Nazarie • 0

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2.0k

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dexseq alternative splicing exon skipping

updated 9.7 years ago by Simon Anders ★ 3.8k • written 9.7 years ago by ebadr • 0

14 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k