Bioconductor Alternative Splicing

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842

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.1 years ago noahhelton98 ▴ 20

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1.1k

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sgseq alternative splicing rna seq

updated 3 months ago by Sara • 0 • written 5.0 years ago by 116100016 • 0

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964

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rna seq SGSeq Alternative splicing

updated 5.1 years ago by Leonard Goldstein ▴ 260 • written 5.1 years ago by 116100016 • 0

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1.2k

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aspli readCounts rna-seq alternative splicing AS

5.8 years ago fernandalpcosta ▴ 10

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1.0k

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R alternative splicing ASpli AsDiscover

5.9 years ago abdul rawoof ▴ 60

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1.1k

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rnaseq alternative splicing ASpli

6.0 years ago nicolas.guyon2 • 0

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1.7k

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rna-seq alternative splicing SGSeq

6.1 years ago andrea.bast • 0

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1.5k

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maser R rMATs alternative splicing

6.2 years ago Reza • 0

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1.5k

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limma rna-seq alternative splicing

updated 7.1 years ago by Gordon Smyth 51k • written 7.1 years ago by lirongrossmann ▴ 80

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1.3k

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limma voom alternative splicing

8.7 years ago osa.zuta ▴ 40

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3.0k

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sgseq splicing alternative splicing

updated 8.7 years ago by Leonard Goldstein ▴ 260 • written 8.7 years ago by vakul.mohanty ▴ 20

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1.2k

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deseq2 dexseq alternative splicing

updated 9.0 years ago by Michael Love 42k • written 9.0 years ago by sahiilseth • 0

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2.4k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

9.1 years ago Fahmi Nazarie • 0

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2.0k

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dexseq alternative splicing exon skipping

updated 9.7 years ago by Simon Anders ★ 3.8k • written 9.7 years ago by ebadr • 0

14 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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