Bioconductor Alternative splicing

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aspli readCounts rna-seq alternative splicing AS

5.2 years ago fernandalpcosta ▴ 10

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874

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 180 • written 4.4 years ago by 116100016 • 0

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 180 • written 8.2 years ago by vakul.mohanty ▴ 10

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limma voom alternative splicing

8.2 years ago osa.zuta ▴ 40

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maser R rMATs alternative splicing

5.6 years ago Reza • 0

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rna-seq alternative splicing SGSeq

5.5 years ago andrea.bast • 0

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936

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rnaseq alternative splicing ASpli

5.4 years ago nicolas.guyon2 • 0

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888

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R alternative splicing ASpli AsDiscover

5.4 years ago • updated 5.3 years ago abdul rawoof ▴ 60

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774

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rna seq SGSeq Alternative splicing

updated 4.5 years ago by Leonard Goldstein ▴ 180 • written 4.5 years ago by 116100016 • 0

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1.9k

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dexseq alternative splicing exon skipping

updated 9.1 years ago by Simon Anders ★ 3.7k • written 9.1 years ago by ebadr • 0

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

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deseq2 dexseq alternative splicing

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by sahiilseth • 0

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limma rna-seq alternative splicing

updated 6.5 years ago by Gordon Smyth 50k • written 6.5 years ago by lirongrossmann ▴ 80

14 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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