Bioconductor AnnotationForge

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annotationforge makeorgpackage go

10.4 years ago Keith Hughitt ▴ 180

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annotation annotationforge annotationdbi makeorgpackagefromncbi

10.8 years ago • updated 10.7 years ago oliver.tills • 0

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annotationforge

updated 11.1 years ago by Marc Carlson ★ 7.2k • written 11.1 years ago by Simon Anders ★ 3.8k

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organismdb annotationdbi annotationforge

updated 11.1 years ago by Marc Carlson ★ 7.2k • written 11.1 years ago by artur ▴ 80

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goprofiles AnnotationForge Bimap GO

11.1 years ago artur ▴ 80

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annotationforge Annotation GO

updated 11.1 years ago by Marc Carlson ★ 7.2k • written 11.1 years ago by artur ▴ 80

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Organism AnnotationDbi AnnotationForge Organism AnnotationDbi AnnotationForge

11.7 years ago Guest User ★ 13k

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Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf

updated 12.1 years ago by James W. MacDonald 68k • written 12.1 years ago by Joao Sollari Lopes ▴ 80

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Annotation probe AnnotationForge Annotation probe AnnotationForge

updated 12.1 years ago by Marc Carlson ★ 7.2k • written 12.1 years ago by gabriel teku ▴ 80

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Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment

updated 12.2 years ago by Marc Carlson ★ 7.2k • written 12.2 years ago by Marco Blanchette ▴ 220

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Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy

12.2 years ago joseph ▴ 50

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Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy

updated 12.2 years ago by Marc Carlson ★ 7.2k • written 12.2 years ago by joseph ▴ 50

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GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge

updated 12.3 years ago by James W. MacDonald 68k • written 12.3 years ago by steven wink ▴ 90

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Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge

12.7 years ago James W. MacDonald 68k

64 results • Page 2 of 2

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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