Showing : AnnotationForge • reset
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makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge makeorgpackage go
10.5 years ago Keith Hughitt ▴ 180
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Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
10.9 years ago oliver.tills • 0
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4
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2.9k
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IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 11.2 years ago by ★ 7.2k • written 11.2 years ago by ★ 3.8k
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AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge
updated 11.2 years ago by ★ 7.2k • written 11.2 years ago by ▴ 80
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9
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3.6k
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Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles AnnotationForge Bimap GO
11.2 years ago artur ▴ 80
3
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3
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error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge Annotation GO
updated 11.3 years ago by ★ 7.2k • written 11.3 years ago by ▴ 80
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Failure to Install Organism Package from AnnotationForge
Organism AnnotationDbi AnnotationForge Organism AnnotationDbi AnnotationForge
11.9 years ago Guest User ★ 13k
1
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1
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2.2k
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Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 80
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1
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1.7k
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Error using makeDBPackage() from AnnotationForge package
Annotation probe AnnotationForge Annotation probe AnnotationForge
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 80
1
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3
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2.3k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 220
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1.4k
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答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
12.4 years ago joseph ▴ 50
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1.3k
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an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 50
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1
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2.1k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 90
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12
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8.2k
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Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
12.8 years ago James W. MacDonald 68k
64 results • Page 2 of 2
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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