Bioconductor Ashr

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 17 months ago by Michael Love 43k • written 17 months ago by Ndimensional ▴ 20

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Ashr LFCShrinkage IHW DESeq2

3.0 years ago Bex • 0

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ashr DESeq2 apeglm

updated 3.3 years ago by Michael Love 43k • written 3.4 years ago by Guandong Shang ▴ 40

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ashr DESeq2 lfcShrink svalue

3.8 years ago Enrico • 0

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deseq2 ashr

4.2 years ago da.de ▴ 30

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deseq2 ashr rna-seq

4.7 years ago Alex • 0

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ashr

4.7 years ago kavator ▴ 30

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ashr Deseq2 lfcThreshold

updated 3.2 years ago by Michael Love 43k • written 4.7 years ago by Iryna • 0

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40