Showing : Aspli • reset
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Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
ASpli
updated 18 months ago by 68k • written 18 months ago by • 0
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522
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I am trying to detect alternative splicing.
ASpli
20 months ago Sebashish • 0
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0
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1.1k
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Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
21 months ago vipul14 • 0
5
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6
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1.7k
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ASpli checks fail on Linux due to missing dependency to statmod
ASpli
updated 2.4 years ago by 53k • written 2.4 years ago by ▴ 10
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1
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1.3k
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Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors Aspli
updated 2.9 years ago by • 0 • written 2.9 years ago by • 0
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3
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5.7k
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ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 2.2 years ago by • 0 • written 3.2 years ago by • 0
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0
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995
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ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli alterna AlternativeSplicing
3.8 years ago hamza_karakurt ▴ 60
6
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10
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2.6k
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ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted assignments
ASpli
updated 4.3 years ago by • 0 • written 4.6 years ago by ▴ 20
0
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1
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2.1k
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ASpli: Error in h(simpleError(msg, call))
ASpli
updated 3.4 years ago by • 0 • written 4.3 years ago by • 0
1
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3
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1.6k
views
ASpli error message
ASpli
updated 3.9 years ago by ▴ 60 • written 4.7 years ago by ▴ 50
1
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11
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2.9k
views
Aspli: error with gbCounts
Aspli ASpli
4.7 years ago jbono ▴ 10
0
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1
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1.2k
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ASpli package function plotGenomicRegions fails in windows
ASpli plotGenomicRegions
updated 5.3 years ago by ▴ 50 • written 6.4 years ago by • 0
0
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1
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947
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function plotgenomicregions does not appear in the aspli package installed in windows
software error aspli plotgenomicregions windows
5.6 years ago joanmarquez21 • 0
3
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2
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1.5k
views
ASpli readCounts never ends!
aspli readCounts rna-seq alternative splicing AS
6.9 years ago fernandalpcosta ▴ 10
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1.2k
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ASpli AsDiscover error
R alternative splicing ASpli AsDiscover
7.0 years ago abdul rawoof ▴ 60
0
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0
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1.3k
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ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq alternative splicing ASpli
7.1 years ago nicolas.guyon2 • 0
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0
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1.1k
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ASPLI (RNAseq AS) R package error
rnaseq ASPLI
7.5 years ago dina.hesham139 • 0
0
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0
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1.5k
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Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
7.5 years ago arphatak • 0
0
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1
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1.3k
views
Splicing analysis with ASpli
ASpli
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by ▴ 30
2
votes
2
replies
1.9k
views
ASpli ERROR during the counting step
ASpli rnaseq
updated 7.8 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
20 results • Page 1 of 1
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Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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