Showing : BSgenome forge • reset
1
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3
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BSgenomeForge version 1.52.0, error in .TwoBits_export
bsgenome forge twobits_export bioconductor
6.4 years ago bioinagesh • 0
0
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7
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2.6k
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BSgenomeForge error in .TwoBits_export
bsgenome forge TwoBits_export
updated 8.3 years ago by 16k • written 8.3 years ago by • 0
2
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5
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3.1k
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Forge a BSgenome data package
bsgenome bsgenome forge
8.9 years ago • updated 8.5 years ago jodiera • 0
0
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3
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1.5k
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BSGenome problem with forgeBSgenomeDataPkg command
bsgenome forge
9.5 years ago pj dias ▴ 60
3
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2
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1.7k
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CRISPRseek with (rough) Draft Genome
crisprseek grna searching bsgenome forge offtarget analysis
updated 9.6 years ago by 16k • written 9.6 years ago by • 0
0
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1
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1.7k
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Error from BSgenome forge using .2bit file
BSgenome forge 2bit bsgnome forge 2bit file
updated 10.8 years ago by 16k • written 10.8 years ago by • 0
2
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1
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1.7k
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How do I create BSgenome Bos_taurus_UMD3.1?
bsgenome forge bovine
updated 10.8 years ago by 16k • written 10.8 years ago by • 0
7 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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