Bioconductor BSgenome forge

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bsgenome forge twobits_export bioconductor

6.1 years ago bioinagesh • 0

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bsgenome forge TwoBits_export

updated 8.0 years ago by Hervé Pagès 16k • written 8.0 years ago by stu111538 • 0

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bsgenome bsgenome forge

8.6 years ago • updated 8.2 years ago jodiera • 0

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bsgenome forge

9.2 years ago pj dias ▴ 60

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crisprseek grna searching bsgenome forge offtarget analysis

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by rajewski23 • 0

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BSgenome forge 2bit bsgnome forge 2bit file

updated 10.5 years ago by Hervé Pagès 16k • written 10.5 years ago by mbk0asis • 0

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bsgenome forge bovine

updated 10.5 years ago by Hervé Pagès 16k • written 10.5 years ago by mbk0asis • 0

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Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …

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Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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