Bioconductor BSgenome forge

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bsgenome forge twobits_export bioconductor

4.1 years ago bioinagesh • 0

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bsgenome forge TwoBits_export

updated 6.0 years ago by Hervé Pagès 16k • written 6.0 years ago by stu111538 • 0

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bsgenome bsgenome forge

6.6 years ago • updated 6.2 years ago jodiera • 0

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bsgenome forge

7.2 years ago pj dias ▴ 60

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crisprseek grna searching bsgenome forge offtarget analysis

updated 7.3 years ago by Hervé Pagès 16k • written 7.3 years ago by rajewski23 • 0

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BSgenome forge 2bit bsgnome forge 2bit file

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by mbk0asis • 0

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bsgenome forge bovine

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by mbk0asis • 0

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Comment: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq by Shihui • 0

Hi Michael, Yes I manually calculated the RPMs by dividing each genes RPM to the library read depth. I didn't do any other normalization …

Comment: shinyMethyl - saving the file by dorota.komar • 0

I tried printing the page as pdf, unfortunately I get the same problem. I guess for now, I will need to save the graphs separately :) Than…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by Mike Smith ★ 6.1k

I'll echo James' suggestion to use the GRCh37 mirror. Most mirrors only have a guaranteed lifetime of 5 years from Ensembl, although it se…

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

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ComBat_seq function in sva package does not return a matrix

Answer: ComBat_seq function in sva package does not return a matrix

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