Showing : BiocManager • reset
0
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2
replies
3.9k
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Problem installing scater
scater R biocmanager bioconductor
updated 6.9 years ago by ★ 29k • written 6.9 years ago by • 0
3
votes
4
replies
2.7k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 6.9 years ago by 4.2k • written 6.9 years ago by • 0
0
votes
3
replies
5.5k
views
Rhdf5lib install problems
R bioconductor rhdf5 biocmanager 3.5
7.0 years ago cem45 • 0
1
vote
6
replies
12k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error bioconductor biocmanager
updated 7.0 years ago by 4.2k • written 7.0 years ago by ▴ 10
1
vote
6
replies
3.1k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 130
1
vote
2
replies
2.9k
views
I can't install the pasilla package
pasilla biocmanager
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 20
1
vote
1
reply
1.4k
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 7.0 years ago by 4.2k • written 7.0 years ago by ▴ 90
0
votes
4
replies
2.0k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
7.2 years ago Kyle Johnsen ▴ 30
58 results • Page 2 of 2
Recent ...
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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