Showing : CGH • reset
5
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3
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1.6k
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Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 690 • written 7.7 years ago by 21k
2
votes
3
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1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.6 years ago by 50k • written 11.8 years ago by ★ 1.5k
1
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2
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2.4k
views
Columns used by read.maimages for Agilent arrays
Annotation CGH limma
11.8 years ago • updated 6.6 years ago Gordon Smyth 50k
0
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0
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1.3k
views
Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
0
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0
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683
views
cgh
CGH CGH
19.3 years ago Auer Michael ▴ 250
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0
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1.1k
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
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1
reply
795
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.7 years ago by ▴ 20 • written 18.7 years ago by ▴ 30
0
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0
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611
views
lowess, quantreg, waveslim
CGH CGH
18.7 years ago Sorani, Marco ▴ 30
0
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0
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1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.2 years ago Mark Reimers ▴ 70
0
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3
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1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 18.0 years ago by ▴ 190 • written 18.0 years ago by 21k
0
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3
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1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
0
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0
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900
views
scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
17.9 years ago Steven McKinney ▴ 310
0
votes
0
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676
views
spotsegmentation
CGH spotSegmentation CGH spotSegmentation
17.9 years ago Abdel Benajjou ▴ 10
0
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0
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897
views
Analysing categorical CGH data
Clustering Cancer CGH made4 Clustering Cancer CGH made4
17.8 years ago Richard Birnie ▴ 10
0
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0
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1.1k
views
Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
17.7 years ago Aedin Culhane ▴ 510
0
votes
1
reply
996
views
Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.7 years ago by ▴ 40 • written 17.7 years ago by ▴ 140
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.6 years ago by ▴ 310 • written 17.6 years ago by ▴ 30
0
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0
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1.1k
views
aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
17.4 years ago Sean Davis 21k
0
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1
reply
709
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
0
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2
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1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
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5
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1.6k
views
from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 17.3 years ago by ▴ 60 • written 17.3 years ago by ▴ 90
0
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0
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677
views
what is the equivalent of normalize.qspline for 2 color arrays?
Normalization CGH affy limma Normalization CGH affy limma
17.3 years ago Betty Gilbert ▴ 50
0
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0
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750
views
how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
17.2 years ago Ruppert Valentino ▴ 270
0
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0
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1.1k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.1 years ago Dick Beyer ★ 1.4k
0
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1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.9 years ago by ▴ 70 • written 16.9 years ago by ★ 1.9k
0
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8
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1.6k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 16.8 years ago by ▴ 100 • written 16.8 years ago by ★ 1.2k
0
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1
reply
821
views
array CGH software
CGH CGH
written 16.8 years ago by ▴ 10
0
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1
reply
1.2k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
0
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4
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1.1k
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
0
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7
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1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
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4
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1.3k
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
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1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
4
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1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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1
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1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
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8
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2.0k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.6 years ago jhs1jjm@leeds.ac.uk ▴ 230
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0
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601
views
Array CGH from A-Z
CGH CGH
16.5 years ago Srinivas Iyyer ▴ 600
0
votes
5
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1.6k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 16.3 years ago by ▴ 290 • written 16.3 years ago by ▴ 740
0
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1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.2 years ago by 21k • written 16.2 years ago by ▴ 500
0
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0
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630
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
16.1 years ago Sean Davis 21k
0
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2
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861
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by 21k
0
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0
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970
views
New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
16.0 years ago Michael Lawrence ▴ 620
0
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2
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1.1k
views
cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
0
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2
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899
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
0
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0
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848
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Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
16.0 years ago mb23 ▴ 30
0
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5
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1.2k
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gains and losses via mode shifting
CGH CGH
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 830
0
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9
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1.7k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
15.9 years ago Oscar Rueda ▴ 60
0
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0
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710
views
snapCGH package - processCGH
CGH CGH
15.9 years ago Henrique Proença ▴ 80
0
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1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.9k
0
votes
1
reply
979
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
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0
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1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
15.6 years ago Florian Markowetz ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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