Showing : CGH • reset
5
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3
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Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 690 • written 7.8 years ago by 21k
2
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3
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1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.6 years ago by 50k • written 11.8 years ago by ★ 1.5k
1
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2
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Columns used by read.maimages for Agilent arrays
Annotation CGH limma
11.8 years ago • updated 6.6 years ago Gordon Smyth 50k
0
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0
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1.3k
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Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
0
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0
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687
views
cgh
CGH CGH
19.4 years ago Auer Michael ▴ 250
0
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0
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1.1k
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
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1
reply
799
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.8 years ago by ▴ 20 • written 18.8 years ago by ▴ 30
0
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0
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613
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lowess, quantreg, waveslim
CGH CGH
18.8 years ago Sorani, Marco ▴ 30
0
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0
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1.0k
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High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.2 years ago Mark Reimers ▴ 70
0
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3
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1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 18.0 years ago by ▴ 190 • written 18.0 years ago by 21k
0
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3
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1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
0
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0
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902
views
scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
17.9 years ago Steven McKinney ▴ 310
0
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0
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678
views
spotsegmentation
CGH spotSegmentation CGH spotSegmentation
17.9 years ago Abdel Benajjou ▴ 10
0
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0
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905
views
Analysing categorical CGH data
Clustering Cancer CGH made4 Clustering Cancer CGH made4
17.8 years ago Richard Birnie ▴ 10
0
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0
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1.1k
views
Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
17.8 years ago Aedin Culhane ▴ 510
0
votes
1
reply
996
views
Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.7 years ago by ▴ 40 • written 17.7 years ago by ▴ 140
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.6 years ago by ▴ 310 • written 17.6 years ago by ▴ 30
0
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0
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1.1k
views
aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
17.5 years ago Sean Davis 21k
0
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1
reply
712
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.5 years ago by 21k • written 17.5 years ago by ★ 1.9k
0
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2
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1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
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5
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1.6k
views
from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 17.3 years ago by ▴ 60 • written 17.3 years ago by ▴ 90
0
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0
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678
views
what is the equivalent of normalize.qspline for 2 color arrays?
Normalization CGH affy limma Normalization CGH affy limma
17.3 years ago Betty Gilbert ▴ 50
0
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0
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754
views
how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
17.2 years ago Ruppert Valentino ▴ 270
0
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0
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1.1k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.2 years ago Dick Beyer ★ 1.4k
0
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1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.9 years ago by ▴ 70 • written 16.9 years ago by ★ 1.9k
0
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8
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1.6k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 16.8 years ago by ▴ 100 • written 16.8 years ago by ★ 1.2k
0
votes
1
reply
825
views
array CGH software
CGH CGH
written 16.8 years ago by ▴ 10
0
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1
reply
1.2k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
0
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4
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1.2k
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
0
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7
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1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.7 years ago by ▴ 250 • written 16.7 years ago by ▴ 440
0
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4
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1.3k
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
0
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7
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1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
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4
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1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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1
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1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
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8
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2.1k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.6 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
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606
views
Array CGH from A-Z
CGH CGH
16.5 years ago Srinivas Iyyer ▴ 600
0
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5
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1.6k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 16.4 years ago by ▴ 290 • written 16.4 years ago by ▴ 740
0
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1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.2 years ago by 21k • written 16.2 years ago by ▴ 500
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0
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636
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Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
16.1 years ago Sean Davis 21k
0
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2
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862
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by 21k
0
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0
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978
views
New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
16.0 years ago Michael Lawrence ▴ 620
0
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2
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1.1k
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cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
0
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2
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906
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
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0
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850
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Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
16.0 years ago mb23 ▴ 30
0
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5
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1.2k
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gains and losses via mode shifting
CGH CGH
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 830
0
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9
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1.8k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
15.9 years ago Oscar Rueda ▴ 60
0
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0
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711
views
snapCGH package - processCGH
CGH CGH
15.9 years ago Henrique Proença ▴ 80
0
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1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.9k
0
votes
1
reply
987
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
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0
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1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
15.6 years ago Florian Markowetz ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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