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ChIPSeqData
•
reset
0
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313
views
ChIP peaks comparison
ChIPSeqData
genomes
ChIPSeq
12 months ago
user_bioinfo
• 0
0
votes
0
replies
505
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
14 months ago
user_bioinfo
• 0
0
votes
0
replies
500
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
18 months ago
Dinesh
• 0
3
votes
1
reply
858
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 18 months ago by
Michael Love
43k • written 18 months ago by
marcusn
▴ 10
0
votes
1
reply
4.8k
views
bwa mem2 index genome - chipseq analysis
Genome
bwamem
ChIPSeqData
index
updated 2.7 years ago by
ATpoint
★ 5.0k • written 2.7 years ago by
Maka
• 0
0
votes
2
replies
1.4k
views
New to ChipSeq getting 0 peaks using dba()
ChipSeq
ChIPSeqData
chipseqDB
2.9 years ago
stacy.genovese
• 0
0
votes
3
replies
1.6k
views
CountOverlap
GeneExpression
ChIPSeqData
updated 3.1 years ago by
James W. MacDonald
68k • written 3.1 years ago by
michela
▴ 20
0
votes
2
replies
3.1k
views
DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExper…
DiffBind
ChIPSeqData
updated 3.4 years ago by
millerh1
▴ 10 • written 3.9 years ago by
sfpacman
• 0
0
votes
0
replies
857
views
ChIPpeakAnno: No seqlevelsStyle compatible entry
ChIPSeqData
4.0 years ago
tom.dean
• 0
5
votes
3
replies
2.8k
views
importing BED with non-integer values
ChIPseeker
ChIPSeqData
updated 5.0 years ago by
James W. MacDonald
68k • written 5.0 years ago by
Morris
▴ 10
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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