Bioconductor ChIPSeqData

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207

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ChIPSeqData genomes ChIPSeq

4 months ago user_bioinfo • 0

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340

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ChIPSeqData interact GenomicRanges HiC

7 months ago user_bioinfo • 0

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357

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DiffBind ChIPSeqData

10 months ago Dinesh • 0

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667

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DiffBind ChIPSeqData DESeq2

updated 11 months ago by Michael Love 43k • written 11 months ago by marcusn ▴ 10

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Genome bwamem ChIPSeqData index

updated 2.1 years ago by ATpoint ★ 4.8k • written 2.1 years ago by Maka • 0

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ChipSeq ChIPSeqData chipseqDB

2.3 years ago stacy.genovese • 0

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1.4k

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GeneExpression ChIPSeqData

updated 2.5 years ago by James W. MacDonald 68k • written 2.5 years ago by michela ▴ 20

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DiffBind ChIPSeqData

updated 2.8 years ago by millerh1 ▴ 10 • written 3.3 years ago by sfpacman • 0

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746

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ChIPSeqData

3.4 years ago tom.dean • 0

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2.4k

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ChIPseeker ChIPSeqData

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by Morris ▴ 10

10 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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