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ChIPSeqData
•
reset
0
votes
0
replies
305
views
ChIP peaks comparison
ChIPSeqData
genomes
ChIPSeq
11 months ago
user_bioinfo
• 0
0
votes
0
replies
489
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
14 months ago
user_bioinfo
• 0
0
votes
0
replies
484
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
17 months ago
Dinesh
• 0
3
votes
1
reply
840
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 17 months ago by
Michael Love
43k • written 17 months ago by
marcusn
▴ 10
0
votes
1
reply
4.8k
views
bwa mem2 index genome - chipseq analysis
Genome
bwamem
ChIPSeqData
index
updated 2.6 years ago by
ATpoint
★ 5.0k • written 2.6 years ago by
Maka
• 0
0
votes
2
replies
1.4k
views
New to ChipSeq getting 0 peaks using dba()
ChipSeq
ChIPSeqData
chipseqDB
2.9 years ago
stacy.genovese
• 0
0
votes
3
replies
1.6k
views
CountOverlap
GeneExpression
ChIPSeqData
updated 3.0 years ago by
James W. MacDonald
68k • written 3.0 years ago by
michela
▴ 20
0
votes
2
replies
3.0k
views
DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExper…
DiffBind
ChIPSeqData
updated 3.3 years ago by
millerh1
▴ 10 • written 3.9 years ago by
sfpacman
• 0
0
votes
0
replies
846
views
ChIPpeakAnno: No seqlevelsStyle compatible entry
ChIPSeqData
3.9 years ago
tom.dean
• 0
5
votes
3
replies
2.8k
views
importing BED with non-integer values
ChIPseeker
ChIPSeqData
updated 4.9 years ago by
James W. MacDonald
68k • written 4.9 years ago by
Morris
▴ 10
10 results • Page
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Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Results with PON give more variants
by
ejafgdf4.ge.r.m
• 0
It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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