Bioconductor ChIPSeqData

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222

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ChIPSeqData interact GenomicRanges HiC

11 weeks ago user_bioinfo • 0

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262

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DiffBind ChIPSeqData

6 months ago Dinesh • 0

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407

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DiffBind ChIPSeqData DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by marcusn • 0

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3.0k

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Genome bwamem ChIPSeqData index

updated 20 months ago by ATpoint ★ 4.5k • written 20 months ago by Maka • 0

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991

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ChipSeq ChIPSeqData chipseqDB

23 months ago stacy.genovese • 0

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1.3k

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GeneExpression ChIPSeqData

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by michela ▴ 20

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2.6k

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DiffBind ChIPSeqData

updated 2.4 years ago by millerh1 ▴ 10 • written 2.9 years ago by sfpacman • 0

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657

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ChIPSeqData

3.0 years ago tom.dean • 0

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2.0k

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ChIPseeker ChIPSeqData

updated 4.0 years ago by James W. MacDonald 67k • written 4.0 years ago by Morris ▴ 10

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Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…

Comment: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Agree. > for library size and the average transcript length, what additional components will dds <- DESeq(dds) continue to normalize? Will…

Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k

> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

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Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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Popular Question to Assa Yeroslaviz ★ 1.5k