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ChIPSeqData
•
reset
0
votes
0
replies
397
views
ChIP peaks comparison
ChIPSeqData
genomes
ChIPSeq
15 months ago
user_bioinfo
• 0
0
votes
0
replies
618
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
17 months ago
user_bioinfo
• 0
0
votes
0
replies
561
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
21 months ago
Dinesh
• 0
3
votes
1
reply
986
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 21 months ago by
Michael Love
43k • written 21 months ago by
marcusn
▴ 10
0
votes
1
reply
5.7k
views
bwa mem2 index genome - chipseq analysis
Genome
bwamem
ChIPSeqData
index
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
Maka
• 0
0
votes
2
replies
1.6k
views
New to ChipSeq getting 0 peaks using dba()
ChipSeq
ChIPSeqData
chipseqDB
3.2 years ago
stacy.genovese
• 0
0
votes
3
replies
1.7k
views
CountOverlap
GeneExpression
ChIPSeqData
updated 3.4 years ago by
James W. MacDonald
68k • written 3.4 years ago by
michela
▴ 20
0
votes
2
replies
3.2k
views
DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExper…
DiffBind
ChIPSeqData
updated 3.6 years ago by
millerh1
▴ 10 • written 4.2 years ago by
sfpacman
• 0
0
votes
0
replies
907
views
ChIPpeakAnno: No seqlevelsStyle compatible entry
ChIPSeqData
4.2 years ago
tom.dean
• 0
5
votes
3
replies
3.0k
views
importing BED with non-integer values
ChIPseeker
ChIPSeqData
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
Morris
▴ 10
10 results • Page
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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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