Bioconductor ChIPSeqData

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1.3k

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ChIPseeker ChIPSeqData

updated 3.4 years ago by James W. MacDonald 65k • written 3.4 years ago by Morris ▴ 10

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960

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GeneExpression ChIPSeqData

updated 18 months ago by James W. MacDonald 65k • written 19 months ago by michela ▴ 20

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2.2k

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DiffBind ChIPSeqData

updated 22 months ago by millerh1 ▴ 10 • written 2.4 years ago by sfpacman • 0

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750

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ChipSeq ChIPSeqData chipseqDB

17 months ago • updated 16 months ago stacy.genovese • 0

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1.9k

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Genome bwamem ChIPSeqData index

updated 13 months ago by ATpoint ★ 4.0k • written 14 months ago by Maka • 0

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502

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ChIPSeqData

2.4 years ago tom.dean • 0

6 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…

Comment: DESeq2 setting significant p-value by Dev • 0

Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …

Answer: OrgDb for maize by James W. MacDonald 65k

``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…

Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0

Understood, Thank you very much for the reply, very kind.

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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