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ChIPSeqData
•
reset
0
votes
0
replies
168
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
11 weeks ago
Dinesh
• 0
1
vote
1
reply
270
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 12 weeks ago by
Michael Love
42k • written 12 weeks ago by
marcusn
• 0
0
votes
1
reply
2.3k
views
bwa mem2 index genome - chipseq analysis
Genome
bwamem
ChIPSeqData
index
updated 17 months ago by
ATpoint
★ 4.2k • written 17 months ago by
Maka
• 0
0
votes
2
replies
877
views
New to ChipSeq getting 0 peaks using dba()
ChipSeq
ChIPSeqData
chipseqDB
20 months ago
stacy.genovese
• 0
0
votes
3
replies
1.1k
views
CountOverlap
GeneExpression
ChIPSeqData
updated 22 months ago by
James W. MacDonald
66k • written 22 months ago by
michela
▴ 20
0
votes
2
replies
2.4k
views
DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExper…
DiffBind
ChIPSeqData
updated 2.1 years ago by
millerh1
▴ 10 • written 2.7 years ago by
sfpacman
• 0
0
votes
0
replies
565
views
ChIPpeakAnno: No seqlevelsStyle compatible entry
ChIPSeqData
2.7 years ago
tom.dean
• 0
5
votes
3
replies
1.6k
views
importing BED with non-integer values
ChIPseeker
ChIPSeqData
updated 3.7 years ago by
James W. MacDonald
66k • written 3.7 years ago by
Morris
▴ 10
8 results • Page
1 of 1
Recent ...
Replies
Answer: Validity of SingleR with very small bulk RNAseq reference
by
ATpoint
★ 4.2k
The vignette data are "large" because it is single-cell data and each cell is considered in this case a "replicate". With bulk RNA-seq you …
Answer: Plot PCA with ellipses using ggplot
by
ATpoint
★ 4.2k
This is rather a ggplot than DESeq2 question, please see for example https://stackoverflow.com/questions/49931681/error-too-few-points-to-c…
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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