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ChipQCReport
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3
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ChIPQC - can't read in bam files
chipqc
chipqcreport
5.7 years ago
molly_the_minotaur
▴ 30
0
votes
4
replies
1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
6.7 years ago • updated 6.6 years ago
jared.andrews07
▴ 30
0
votes
4
replies
1.6k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 50
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc
diffbind
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Coby Viner
▴ 50
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 50
0
votes
2
replies
976
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
5.7 years ago
tapio.envall
• 0
0
votes
1
reply
2.2k
views
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Roger
• 0
0
votes
1
reply
531
views
Empty ChipQC Report
ChipQCReport
updated 15 months ago by
Okan
• 0 • written 17 months ago by
stacy.genovese
• 0
8 results • Page
1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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