Bioconductor Coldata

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295

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DESeq2 design coldata

updated 15 days ago by swbarnes2 ★ 1.4k • written 16 days ago by arfranco ▴ 130

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567

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ColData pheatmap DESeq2

written 11 months ago by dania.khalid • 0

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1.1k

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SingleCellExperiment colData rename

updated 15 months ago by Basti ▴ 780 • written 15 months ago by achoppe ▴ 10

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587

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BiSeq Coldata

4.0 years ago akhaira • 0

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1.4k

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deseq2 levels factor colData

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by ariel ▴ 20

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42k

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deseq2 coldata

updated 5.5 years ago by swbarnes2 ★ 1.4k • written 5.5 years ago by mjrarcher ▴ 10

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3.2k

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variantannotation coldata

updated 5.6 years ago by Valerie Obenchain ★ 6.8k • written 5.6 years ago by lvclark ▴ 10

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3.6k

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deseq2 coldata NA

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by t.kuilman ▴ 170

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1.5k

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multiassayexperiment colData

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.5 years ago by Lluís Revilla Sancho ▴ 730

9 results • Page 1 of 1

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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Dario Strbenac ★ 1.5k

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