Bioconductor Coldata

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42k

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deseq2 coldata

updated 5.5 years ago by swbarnes2 ★ 1.4k • written 5.5 years ago by mjrarcher ▴ 10

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3.6k

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deseq2 coldata NA

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by t.kuilman ▴ 170

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3.1k

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variantannotation coldata

updated 5.6 years ago by Valerie Obenchain ★ 6.8k • written 5.6 years ago by lvclark ▴ 10

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1.5k

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multiassayexperiment colData

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.4 years ago by Lluís Revilla Sancho ▴ 730

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1.4k

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deseq2 levels factor colData

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by ariel ▴ 20

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1.1k

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SingleCellExperiment colData rename

updated 15 months ago by Basti ▴ 780 • written 15 months ago by achoppe ▴ 10

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583

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BiSeq Coldata

4.0 years ago akhaira • 0

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566

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ColData pheatmap DESeq2

written 10 months ago by dania.khalid • 0

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281

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DESeq2 design coldata

updated 13 days ago by swbarnes2 ★ 1.4k • written 14 days ago by arfranco ▴ 130

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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Popular Question to Johannes Rainer ★ 2.0k