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2
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4.9k
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Duplicated Gene IDs - averaging
convert metaArray convert metaArray
14.4 years ago boczniak767 ▴ 740
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chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO
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updated 14.5 years ago by ▴ 810 • written 14.5 years ago by ★ 4.3k
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import.bw to Rle?
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creating a UniprotIdentifier within GSEABase
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updated 14.5 years ago by 25k • written 14.5 years ago by ▴ 910
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error in coverting readaligned object to GenomeData
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adding annotation to illumina data
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14.6 years ago Kripa R ▴ 180
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inconsistent CHR mapping- IlluminaHumanMethylation450k.db
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updated 14.6 years ago by ▴ 30 • written 14.6 years ago by ▴ 10
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Very high memory usage when using rtracklayer to import GFF3
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updated 14.6 years ago by ★ 11k • written 14.6 years ago by ▴ 140
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snpMatrix trouble with read.HapMap.data() and ld.snp()
SNP convert SNP convert
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Segmentation fault using pair.result.ld.snp in snpMatrix package
SNP convert SNP convert
14.6 years ago rna seq ▴ 90
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IRanges package: findOverlaps on blobs
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fold change after gcrma()
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convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
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updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 290
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IRanges package: findOverlaps on blobs
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updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 250
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arrayQualityMEtrics
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updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 210
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PICS: vignette code outdated (use of GenomeData-object)
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updated 14.8 years ago by ★ 6.8k • written 14.8 years ago by ▴ 330
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updated 14.8 years ago by ▴ 50 • written 14.8 years ago by ▴ 120
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updated 14.9 years ago by ▴ 310 • written 14.9 years ago by ▴ 130
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Are there any module could be used to convert a data.frame table to a matrix format.
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14.9 years ago a a ▴ 10
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Get Gene annotation (GO terms)
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updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 860
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fastq files
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updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 860
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comparing HG-U219 data to HG-U133 data from public databases
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updated 14.9 years ago by ▴ 110 • written 14.9 years ago by ▴ 340
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find overlaping genes in ENSEMBL gene ID list and NCBI gene ID list
convert convert
updated 14.9 years ago by 16k • written 14.9 years ago by ▴ 20
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[Bioc-sig-seq] SRAdb and getFastq
Cancer convert Cancer convert
14.9 years ago Jack Zhu ▴ 170
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EBImage: alpha plane in grey scale
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updated 15.0 years ago by ▴ 310 • written 15.0 years ago by ▴ 60
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Normalization quality assessment tools?
Normalization convert Normalization convert
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 540
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6
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IPI to entrez id
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15.0 years ago viritha kaza ▴ 580
0
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limma topTable annotation
GO hgu133plus2 affy limma convert Category GO hgu133plus2 affy limma convert Category
updated 15.0 years ago by ▴ 130 • written 15.0 years ago by 53k
0
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1
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limma topTable annotation
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updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 130
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converting Affy indices to x,y coordinates
cdf probe convert cdf probe convert
updated 15.0 years ago by ▴ 30 • written 15.0 years ago by ▴ 20
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How to make a probe package with the GPL1073.probe file from GEO.
cdf probe affy convert AnnotationDbi cdf probe affy convert AnnotationDbi
updated 15.0 years ago by ★ 4.1k • written 15.0 years ago by ▴ 10
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Gene Name annotation with ChIPpeakAnno
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15.1 years ago Julie Zhu ★ 4.3k
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15.1 years ago Julie Zhu ★ 4.3k
0
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Using annotation package how can I convert the probe > ID's to Gene names.
Annotation GO probe affy convert Annotation GO probe affy convert
15.1 years ago Paul Geeleher ★ 1.3k
0
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Using annotation package how can I convert the probe > ID's to Gene names.
Annotation GO probe annotate convert Annotation GO probe annotate convert
updated 15.1 years ago by ★ 1.3k • written 15.1 years ago by ▴ 90
0
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question about get a summary gene expression information from the probe set associated with one specific gene
Annotation GO cdf probe affy convert ASSIGN Annotation GO cdf probe affy convert
updated 15.1 years ago by ▴ 90 • written 15.1 years ago by 68k
0
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question about get a summary gene expression information from the probe set associated with one specific gene
Annotation probe convert ASSIGN Annotation probe convert ASSIGN
15.1 years ago Xiaowei Guan ▴ 90
0
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ESD files from Beckman
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15.2 years ago Wolfgang Huber ★ 13k
0
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: [R] Problems wih EBImage for windows 7 --Loading required package: abind Error in library.dynam(lib, package, package.lib) : shared library 'EBImag…
GUI convert EBImage GUI convert EBImage
15.2 years ago Evan Misshula ▴ 80
0
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Dependency Problems for Windows 7 EBImage and ImageMagic "can't load Error in library.dynam(lib, package, package.lib) : shared library 'EBImage' not…
GO convert EBImage GO convert EBImage
15.2 years ago Evan Misshula ▴ 80
0
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Dependency Problems for Windows 7 EBImage and ImageMagic "can't load Error in library.dynam(lib, package, package.lib) : shared library 'EBImage' not…
GO convert EBImage GO convert EBImage
15.2 years ago Evan Misshula ▴ 80
0
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: [R] Problems wih EBImage for windows 7
convert EBImage convert EBImage
updated 15.2 years ago by ▴ 310 • written 15.2 years ago by ▴ 80
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missing reads in alignerBAM
Alignment convert Alignment convert
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 90
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GEOquery error
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updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 570
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ExonMap and xmap package question
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15.2 years ago Julie Zhu ★ 4.3k
0
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CRLMM calls to forward strand genotypes?
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15.2 years ago wrighth ▴ 260
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how to go from an short read alignment file to a SNPs table for population genetic analysis
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Thank you so much for your help! will try to proceed with the suggestion
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Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
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Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
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All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
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