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ChIPpeakAnno: Inquiry for Worm Analysis
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13.9 years ago Julie Zhu ★ 4.3k
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1
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1.5k
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Problems installing EBImage package
convert EBImage convert EBImage
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ★ 13k
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5
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Adjacency to network using R
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updated 13.9 years ago by ★ 4.2k • written 13.9 years ago by ▴ 120
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4.1k
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problems generating a gene2GOlist in topGO
Genetics Annotation GO hgu95av2 convert biomaRt topGO Genetics Annotation GO hgu95av2
updated 13.9 years ago by ▴ 400 • written 13.9 years ago by ▴ 510
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GAGE Package: Problem with probeset IDs conversion to Gene names or vice versa
convert gage convert gage
updated 13.9 years ago by ★ 1.6k • written 13.9 years ago by ▴ 200
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3
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A question about MA and RG lists and normalization with two channel agilent arrays.
convert convert
updated 13.9 years ago by ▴ 390 • written 13.9 years ago by ▴ 90
0
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665
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ChipPeakAnno question about file conversion
convert ChIPpeakAnno convert ChIPpeakAnno
13.9 years ago Julie Zhu ★ 4.3k
0
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11
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creating GRanges and reading BAM files
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updated 13.9 years ago by ▴ 80 • written 13.9 years ago by ▴ 70
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Coverage Question: GenomicRanges
Coverage convert Coverage convert
updated 13.9 years ago by ★ 11k • written 13.9 years ago by ▴ 250
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4
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ChIPpeakAnno as.data.frame error
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updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 910
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6
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arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
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arrayQualityMetrics package - bugs and errors
limma affyPLM convert arrayQualityMetrics limma affyPLM convert arrayQualityMetrics
13.9 years ago Wolfgang Huber ★ 13k
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IlluminaMousev2.db probe quality information questions?
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13.9 years ago Mark Dunning ★ 1.1k
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GAGE Package: Problem with "Affymetrix hg u133 plus 2 probeset IDs" conversion to Gene names or vice versa
convert gage convert gage
13.9 years ago Javerjung Sandhu ▴ 200
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1
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GAGE Package: Problem with Affymetrix hg u133 plus 2 probeset IDs conversion to Gene names or vice versa
convert gage convert gage
13.9 years ago Javerjung Sandhu ▴ 200
0
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convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation convert genomeIntervals Annotation convert genomeIntervals
13.9 years ago delhomme@embl.de ★ 1.2k
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Help with promoter analysis
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13.9 years ago Davy ▴ 20
0
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convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
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13.9 years ago karlerhard@berkeley.edu ▴ 60
0
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1
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1.3k
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IlluminaMousev2.db probe quality information questions?
probe convert probe convert
14.0 years ago Lourdes Peña Castillo ▴ 140
0
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0
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using easyRNASeq examples
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14.0 years ago delhomme@embl.de ★ 1.2k
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1
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1.7k
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how can i convert a gse object(expression sets) to affybatch
convert GEOquery convert GEOquery
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 100
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8
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DESeq and transcript-wise analysis
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14.0 years ago Elena Sorokin ▴ 160
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Genomicfeatures chromosome names matching
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14.0 years ago Hervé Pagès 16k
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7
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Limma question_Intra-Spot Correlation Question
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updated 14.0 years ago by 53k • written 14.0 years ago by ▴ 30
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create GeneSetCollection from OBOCollection
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14.0 years ago Marc Carlson ★ 7.2k
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converting transcripts to gene level
convert convert
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ▴ 410
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converting intensity values to log ratios?
multtest limma siggenes convert multtest limma siggenes convert
14.0 years ago James W. MacDonald 68k
0
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1
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refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 240
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converting intensity values to log ratios?
convert convert
14.0 years ago Mark Baumeister ▴ 40
0
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1
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977
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Strecth of N's in between reads
convert convert
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 120
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create GeneSetCollection from OBOCollection
GO convert GOstats GO convert GOstats
14.0 years ago Wendy Qiao ▴ 360
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writing BAM files from within R
convert Rsamtools convert Rsamtools
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 10
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htSeqTools: using GRanges and GRangesList
convert htSeqTools convert htSeqTools
14.0 years ago Oscar Reina ▴ 20
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Saureus Affy Chip
probe affy limma convert probe affy limma convert
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 200
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question subsetting expressionSet
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updated 14.1 years ago by ▴ 550 • written 14.1 years ago by ★ 4.1k
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GB_ACC to Entrez ids
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updated 14.1 years ago by 6.7k • written 14.1 years ago by ▴ 570
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Help on alternative and efficient data frame manipulation
convert convert
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ★ 4.3k
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Combining raw images and locs files from different scans
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updated 14.1 years ago by ★ 6.6k • written 14.1 years ago by ▴ 350
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Extracting PROBE_ID from lumiBatch
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14.1 years ago Pan Du ▴ 440
0
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5
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deqseq_count and BWA-based SAM files
convert DEXSeq convert DEXSeq
updated 14.2 years ago by ▴ 70 • written 14.2 years ago by ★ 13k
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ddCt isn't working with exported ABI7500-RT-PACR file
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updated 14.2 years ago by ▴ 300 • written 14.2 years ago by ▴ 20
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GRanges - coercion from dataframe
convert IRanges convert IRanges
14.2 years ago Fahim Md ▴ 250
0
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diagnosing problems with processing microarray data using lumi package
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14.2 years ago Juliet Hannah ▴ 360
3
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convert GeneSetCollection to a list
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updated 14.2 years ago by ★ 3.4k • written 14.2 years ago by ▴ 360
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1.8k
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DESeq - read counts
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updated 14.2 years ago by ★ 13k • written 14.2 years ago by ▴ 10
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Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
Cancer convert Cancer convert
14.3 years ago Chao-Jen Wong ▴ 580
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R/Bioconductor CDF to Affymetrix CDF
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updated 14.3 years ago by ▴ 10 • written 14.3 years ago by ▴ 830
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present / absent calls and detection p-values
convert convert
updated 14.3 years ago by ★ 3.6k • written 14.3 years ago by ▴ 340
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1
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problem with frma( )
convert frma convert frma
updated 14.3 years ago by ▴ 830 • written 14.3 years ago by ▴ 20
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[Bioc-sig-seq] first remove low quality or adaptor
Cancer Biostrings convert Cancer Biostrings convert
updated 14.4 years ago by ★ 2.0k • written 14.4 years ago by 16k
462 results • Page 4 of 10
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Answer: Limma-voom sample weights and impact on DEG numbers by fawadsaafir • 0
<a href="https://deltaexecutoor.com/">delta apk</a> también conocido como Delta X, es una herramienta avanzada para ejecutar scripts perso…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
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