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ChIPpeakAnno: Inquiry for Worm Analysis
Annotation
GO
annotate
convert
ChIPpeakAnno
Annotation
GO
annotate
convert
ChIPpeakAnno
13.9 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.5k
views
Problems installing EBImage package
convert
EBImage
convert
EBImage
updated 13.9 years ago by
Wolfgang Huber
★ 13k • written 13.9 years ago by
Guest User
★ 13k
0
votes
5
replies
4.2k
views
Adjacency to network using R
Visualization
Network
convert
Visualization
Network
convert
updated 13.9 years ago by
Tim Triche
★ 4.2k • written 13.9 years ago by
pankaj borah
▴ 120
0
votes
1
reply
4.1k
views
problems generating a gene2GOlist in topGO
Genetics
Annotation
GO
hgu95av2
convert
biomaRt
topGO
Genetics
Annotation
GO
hgu95av2
updated 13.9 years ago by
Adrian Alexa
▴ 400 • written 13.9 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
1
reply
1.4k
views
GAGE Package: Problem with probeset IDs conversion to Gene names or vice versa
convert
gage
convert
gage
updated 13.9 years ago by
Luo Weijun
★ 1.6k • written 13.9 years ago by
Javerjung Sandhu
▴ 200
0
votes
3
replies
1.9k
views
A question about MA and RG lists and normalization with two channel agilent arrays.
convert
convert
updated 13.9 years ago by
Marcus Davy
▴ 390 • written 13.9 years ago by
Richard Green
▴ 90
0
votes
0
replies
665
views
ChipPeakAnno question about file conversion
convert
ChIPpeakAnno
convert
ChIPpeakAnno
13.9 years ago
Julie Zhu
★ 4.3k
0
votes
11
replies
5.2k
views
creating GRanges and reading BAM files
Coverage
convert
Coverage
convert
updated 13.9 years ago by
Sunny Yu Liu
▴ 80 • written 13.9 years ago by
David A.
▴ 70
0
votes
2
replies
1.6k
views
Coverage Question: GenomicRanges
Coverage
convert
Coverage
convert
updated 13.9 years ago by
Michael Lawrence
★ 11k • written 13.9 years ago by
Lakshmanan Iyer
▴ 250
0
votes
4
replies
2.7k
views
ChIPpeakAnno as.data.frame error
GO
AnnotationData
annotate
convert
ChIPpeakAnno
GO
AnnotationData
annotate
convert
updated 13.9 years ago by
Julie Zhu
★ 4.3k • written 13.9 years ago by
Mark Cowley
▴ 910
0
votes
6
replies
2.0k
views
arrayQualityMetrics error with MAList
convert
arrayQualityMetrics
convert
arrayQualityMetrics
updated 13.9 years ago by
Wolfgang Huber
★ 13k • written 13.9 years ago by
karen power
▴ 10
0
votes
0
replies
1.6k
views
arrayQualityMetrics package - bugs and errors
limma
affyPLM
convert
arrayQualityMetrics
limma
affyPLM
convert
arrayQualityMetrics
13.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
970
views
IlluminaMousev2.db probe quality information questions?
Alignment
Annotation
probe
convert
Alignment
Annotation
probe
convert
13.9 years ago
Mark Dunning
★ 1.1k
0
votes
0
replies
1.4k
views
GAGE Package: Problem with "Affymetrix hg u133 plus 2 probeset IDs" conversion to Gene names or vice versa
convert
gage
convert
gage
13.9 years ago
Javerjung Sandhu
▴ 200
0
votes
1
reply
1.6k
views
GAGE Package: Problem with Affymetrix hg u133 plus 2 probeset IDs conversion to Gene names or vice versa
convert
gage
convert
gage
13.9 years ago
Javerjung Sandhu
▴ 200
0
votes
0
replies
1.2k
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation
convert
genomeIntervals
Annotation
convert
genomeIntervals
13.9 years ago
delhomme@embl.de
★ 1.2k
0
votes
5
replies
2.4k
views
Help with promoter analysis
Transcription
convert
biomaRt
Transcription
convert
biomaRt
13.9 years ago
Davy
▴ 20
0
votes
0
replies
788
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
convert
convert
13.9 years ago
karlerhard@berkeley.edu
▴ 60
0
votes
1
reply
1.3k
views
IlluminaMousev2.db probe quality information questions?
probe
convert
probe
convert
14.0 years ago
Lourdes Peña Castillo
▴ 140
0
votes
0
replies
1.3k
views
using easyRNASeq examples
RNASeq
Annotation
BSgenome
convert
biomaRt
BSgenome
IRanges
DESeq
easyRNASeq
RNASeq
14.0 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.7k
views
how can i convert a gse object(expression sets) to affybatch
convert
GEOquery
convert
GEOquery
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
Salwa Eid
▴ 100
0
votes
8
replies
4.6k
views
DESeq and transcript-wise analysis
convert
DESeq
convert
DESeq
14.0 years ago
Elena Sorokin
▴ 160
0
votes
0
replies
1.0k
views
Genomicfeatures chromosome names matching
Cancer
TranscriptDb
convert
Cancer
TranscriptDb
convert
14.0 years ago
Hervé Pagès
16k
0
votes
7
replies
1.9k
views
Limma question_Intra-Spot Correlation Question
Normalization
limma
PROcess
convert
Normalization
limma
PROcess
convert
updated 14.0 years ago by
Gordon Smyth
53k • written 14.0 years ago by
jgomez@uni-potsdam.de
▴ 30
0
votes
0
replies
835
views
create GeneSetCollection from OBOCollection
GO
convert
GOstats
GO
convert
GOstats
14.0 years ago
Marc Carlson
★ 7.2k
0
votes
2
replies
3.5k
views
converting transcripts to gene level
convert
convert
updated 14.0 years ago by
Michael Lawrence
★ 11k • written 14.0 years ago by
Abhishek Pratap
▴ 410
0
votes
0
replies
1.5k
views
converting intensity values to log ratios?
multtest
limma
siggenes
convert
multtest
limma
siggenes
convert
14.0 years ago
James W. MacDonald
68k
0
votes
1
reply
1.8k
views
refseq to genesymbol with BiomaRt - problem occurs
GO
hgu133plus2
PROcess
convert
biomaRt
GO
hgu133plus2
PROcess
convert
biomaRt
updated 14.0 years ago by
Wolfgang Huber
★ 13k • written 14.0 years ago by
Andrea Grilli
▴ 240
0
votes
0
replies
879
views
converting intensity values to log ratios?
convert
convert
14.0 years ago
Mark Baumeister
▴ 40
0
votes
1
reply
977
views
Strecth of N's in between reads
convert
convert
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
MLSC MANIPAL
▴ 120
0
votes
0
replies
920
views
create GeneSetCollection from OBOCollection
GO
convert
GOstats
GO
convert
GOstats
14.0 years ago
Wendy Qiao
▴ 360
0
votes
1
reply
4.4k
views
writing BAM files from within R
convert
Rsamtools
convert
Rsamtools
updated 14.0 years ago by
Valerie Obenchain
★ 6.8k • written 14.0 years ago by
margherita mutarelli
▴ 10
0
votes
0
replies
1.2k
views
htSeqTools: using GRanges and GRangesList
convert
htSeqTools
convert
htSeqTools
14.0 years ago
Oscar Reina
▴ 20
0
votes
1
reply
979
views
Saureus Affy Chip
probe
affy
limma
convert
probe
affy
limma
convert
updated 14.1 years ago by
Marc Carlson
★ 7.2k • written 14.1 years ago by
Marcos Pinho
▴ 200
0
votes
2
replies
1.4k
views
question subsetting expressionSet
GO
convert
GO
convert
updated 14.1 years ago by
Oosting, J. PATH
▴ 550 • written 14.1 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
3.1k
views
GB_ACC to Entrez ids
Microarray
Annotation
probe
convert
Microarray
Annotation
probe
convert
updated 14.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.1 years ago by
Reema Singh
▴ 570
0
votes
5
replies
1.2k
views
Help on alternative and efficient data frame manipulation
convert
convert
updated 14.1 years ago by
Steve Lianoglou
★ 13k • written 14.1 years ago by
Julie Zhu
★ 4.3k
0
votes
3
replies
1.3k
views
Combining raw images and locs files from different scans
convert
convert
updated 14.1 years ago by
Mike Smith
★ 6.6k • written 14.1 years ago by
Aliaksei Holik
▴ 350
0
votes
0
replies
985
views
Extracting PROBE_ID from lumiBatch
Annotation
probe
convert
Annotation
probe
convert
14.1 years ago
Pan Du
▴ 440
0
votes
5
replies
2.0k
views
deqseq_count and BWA-based SAM files
convert
DEXSeq
convert
DEXSeq
updated 14.2 years ago by
Shona Wood
▴ 70 • written 14.2 years ago by
Guest User
★ 13k
0
votes
3
replies
2.6k
views
ddCt isn't working with exported ABI7500-RT-PACR file
convert
ddCt
convert
ddCt
updated 14.2 years ago by
james perkins
▴ 300 • written 14.2 years ago by
Alnaji, Fadi
▴ 20
0
votes
4
replies
6.1k
views
GRanges - coercion from dataframe
convert
IRanges
convert
IRanges
14.2 years ago
Fahim Md
▴ 250
0
votes
0
replies
1.3k
views
diagnosing problems with processing microarray data using lumi package
Microarray
probe
PROcess
convert
lumi
Microarray
probe
PROcess
convert
lumi
14.2 years ago
Juliet Hannah
▴ 360
3
votes
1
reply
4.3k
views
convert GeneSetCollection to a list
convert
convert
updated 14.2 years ago by
Robert Castelo
★ 3.4k • written 14.2 years ago by
Wendy Qiao
▴ 360
0
votes
1
reply
1.8k
views
DESeq - read counts
convert
convert
updated 14.2 years ago by
Wolfgang Huber
★ 13k • written 14.2 years ago by
Avinash S
▴ 10
0
votes
0
replies
13k
views
Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
Cancer
convert
Cancer
convert
14.3 years ago
Chao-Jen Wong
▴ 580
0
votes
4
replies
1.6k
views
R/Bioconductor CDF to Affymetrix CDF
cdf
convert
cdf
convert
updated 14.3 years ago by
Benjamin Otto
▴ 10 • written 14.3 years ago by
Benjamin Otto
▴ 830
0
votes
2
replies
1.3k
views
present / absent calls and detection p-values
convert
convert
updated 14.3 years ago by
Wei Shi
★ 3.6k • written 14.3 years ago by
Andreas Heider
▴ 340
0
votes
1
reply
1.3k
views
problem with frma( )
convert
frma
convert
frma
updated 14.3 years ago by
Matthew McCall
▴ 830 • written 14.3 years ago by
Wang,Ying
▴ 20
0
votes
3
replies
1.5k
views
[Bioc-sig-seq] first remove low quality or adaptor
Cancer
Biostrings
convert
Cancer
Biostrings
convert
updated 14.4 years ago by
wang peter
★ 2.0k • written 14.4 years ago by
Hervé Pagès
16k
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Answer: Limma-voom sample weights and impact on DEG numbers
by
fawadsaafir
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<a href="https://deltaexecutoor.com/">delta apk</a> también conocido como Delta X, es una herramienta avanzada para ejecutar scripts perso…
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thanks for sharing!!! https://cran.r-project.org/
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The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
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Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
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