Bioconductor DESEQ

Showing : DESEQ • reset

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322

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DESeq2 deseq

10 weeks ago Meme • 0

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342

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deseq DESeq2

updated 4 months ago by ATpoint ★ 4.1k • written 4 months ago by Hugo • 0

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526

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deseq DESeq2

5 months ago georgii.vdovin • 0

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385

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Deseq DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by georgii.vdovin • 0

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657

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Z-score RNASeqData Deseq DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by khaserdene99 • 0

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901

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DESeq DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Abir.khazaal ▴ 10

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26k

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deseq deseq2

updated 9 months ago by Erika • 0 • written 9.3 years ago by c.lieftink@nki.nl ▴ 40

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662

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 9 months ago by Michael Love 42k • written 9 months ago by Ndimensional ▴ 20

8 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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