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DESeqDataSet
•
reset
0
votes
2
replies
5.1k
views
Plots and Heat Maps not displaying in RGui Window
plot
heatmap
graphical
rnaseqgene
deseqdataset
9.0 years ago
greg.mulhearn
• 0
2
votes
10
replies
4.7k
views
DESeqDataSet 2 factors with a covariate
covariate
deseqdataset
Deseq2
multiple factor design
updated 8.8 years ago by
Michael Love
42k • written 8.8 years ago by
Lillyhchen
▴ 10
3
votes
4
replies
8.2k
views
DESeqDataSetFromMatrix giving error: "argument must be coercible to non-negative integer"
DESeqDataSet
DESeqDataSetFromMatrix
rnaseq
deseq2
7.9 years ago
ErickF
▴ 40
0
votes
2
replies
3.1k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2
deseqdataset
rnaseqgene
fastq
reference genome
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
greg.mulhearn
• 0
5
votes
8
replies
3.3k
views
Large disk images of DESeqDataSet / SummarizedExperiment objects when using the save function
SummarizedExperiment
DESeqDataSet
GenomicRanges
DESeq2
save
updated 9.2 years ago by
Wolfgang Huber
★ 13k • written 9.2 years ago by
akaever
▴ 30
0
votes
2
replies
899
views
constructing a DESeqDataSet
deseq2
DESeqDataSet
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
linouhao
▴ 20
1
vote
3
replies
2.6k
views
deseq2 DESeqDataSet size when saved
deseq2
infrastructure
deseqdataset
importing
updated 5.6 years ago by
Michael Love
42k • written 5.6 years ago by
eric.blanc
• 0
0
votes
2
replies
976
views
Error when creating a DESeqDataSet object
deseq2
DESeqDataSet
updated 5.1 years ago by
Michael Love
42k • written 5.1 years ago by
colaneri
▴ 30
1
vote
4
replies
4.3k
views
Running DESeqDataSet with 4 factors?
summarizedexperiment
deseq2
deseqdataset
multiple factor design
differential gene expression
8.8 years ago
Lillyhchen
▴ 10
2
votes
1
reply
4.0k
views
DESeq2 error when creating the DESeqDataSet
deseq2
bioconductor
deseqdataset
r
summarizedexperiment
7.5 years ago
sebastian.lobentanzer
▴ 50
3
votes
7
replies
3.8k
views
Transcript level differential expression analysis
deseq2
deseqdataset
transcripts
updated 7.1 years ago by
Michael Love
42k • written 7.1 years ago by
tarun2
• 0
1
vote
2
replies
1.3k
views
DESeq2: different number of significant genes between DESeqDataSetFromMatrix and DESeqDataSetFromHTSeqCount
deseq2
deseqdatasetfrommatrix
deseqdataset
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
jillian.waters
• 0
12 results • Page
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Replies
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark?
by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip
by
James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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