Biostar DEseq

Showing : DEseq • reset

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36k

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deseq deseq2

updated 10 weeks ago by Michael Love 35k • written 7.2 years ago by francesca.defilippis ▴ 70

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8.9k

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deseq differential gene expression statistics p-value

updated 10 months ago by Kai_Qi ▴ 10 • written 5.9 years ago by Giard ▴ 30

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5.5k

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rnaseq deseq2 deseq standard error confidence interval

updated 10 weeks ago by Michael Love 35k • written 5.8 years ago by lisa.crossman ▴ 10

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394

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r DESeq DESeq2

3 months ago s-rhussien • 0

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307

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DESeq metagene2 metagene

updated 10 months ago by ericfournier2 ▴ 10 • written 10 months ago by GM ▴ 10

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218

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RNASeq DESeq

5 months ago • updated 4 months ago krawczyk.margarita • 0

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314

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DESeq DESeq2 R

4 months ago jbnrodriguez • 0

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164

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DESeq DESeq2

updated 12 weeks ago by Michael Love 35k • written 12 weeks ago by n.vandis • 0

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256

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etLRT WALD edgeR DESEq

updated 5 months ago by Michael Love 35k • written 5 months ago by aiswaryabioinfo • 0

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524

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DESeq2 ZINB zinbwave deseq

updated 11 months ago by Michael Love 35k • written 11 months ago by rowcyclecamp • 0

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449

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DESeq2 MAplot deseq

updated 10 months ago by Michael Love 35k • written 10 months ago by sp • 0

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11k

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edgeR DESeq edgeR DESeq

updated 9 months ago by mehdimerbah • 0 • written 8.8 years ago by dvir.tau@gmail.com ▴ 30

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150

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DESeq DESeq2

5 weeks ago matthew.valentine • 0

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178

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RNAseq LFC DEseq

8 months ago ayy2110 • 0

14 results • Page 1 of 1

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Comment: Uniform window size for different genes by rbenel ▴ 20

Thanks, I'll keep working on it because the `png("two_transcripts.ong", 240)` still looks a bit weird... thanks though!

Comment: DTU using DEXSeq (time series data with condition factor) by Alejandro Reyes ★ 1.8k

Apologies for late reply, Nirad. You probably figured it out by now. In the formulae, the 'exon' term would take the baseline transcript us…

Comment: DEXSeq prepare annotation script throws "object has no attribute 'next'" for Ens by Alejandro Reyes ★ 1.8k

Apologies for late reply. Could you share the link to the gtf source?

Answer: Normalizing exonic reads and then log transforming or variance stabilising by Alejandro Reyes ★ 1.8k

Hello. Short answer is yes, count-level transoformation for variance stabilization also work for exon-count level matrices.

Comment: A mistake came when I install some packages using "biocmanager" by f1014063507 • 0

Thanks for answering. In fact, I can use the computer to install packages by "install.packages()", but the "biocmanager::install()" doesn'…

Votes

Answer: Joint disperstion estimation for DEXSeq and DESeq2

Answer: Problems to find the pvalues via rowttests

A: How to use subSeq with DNAStringSet and information of GroupedIRanges?

Annotating GRanges with TxDb gene models using plyranges

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