Showing : DEseq • reset
3
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2
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305
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DESeq2 is renaming gene names and lack of downregulated genes
DESeq DESeq2
6 months ago manwar • 0
2
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4
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2.6k
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ERROR configuration failed for package RCurl during installation of DESeq
ERROR: configuration failed for package ‘RCurl’ DESeq
updated 11 months ago by • 0 • written 2.8 years ago by ▴ 10
2
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1
reply
470
views
Difference between raw counts and featureCounts for DESeq2
deseq featurecounts counts DESeq2
updated 8 months ago by ★ 1.2k • written 8 months ago by • 0
1
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2
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341
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Deseq2 with imbalanced design
Deseq
10 months ago Alex • 0
1
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1
reply
181
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How to design multifactor DESEQ2 formula?
DESEQ DESEQ2
updated 5 months ago by ★ 2.1k • written 5 months ago by • 0
1
vote
1
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291
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Gene wise dispersion estimate Process - From the prior to the posterior
GLM prior DESeq LFC
updated 7 months ago by 39k • written 7 months ago by • 0
1
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5
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602
views
Potential outlier/high variance
deseq DESeq2
updated 9 months ago by 39k • written 10 months ago by • 0
1
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5
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425
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Error in DEseq
DEseq RNASeqData
updated 8 months ago by ★ 2.1k • written 8 months ago by • 0
0
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1
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2.3k
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voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert
updated 5 weeks ago by 47k • written 10.7 years ago by 6.5k
0
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1
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100
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What is the difference between these two arguments for log fold change shrinkage?
DESeq
updated 10 days ago by 39k • written 12 days ago by ▴ 10
0
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1
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125
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Is it possible to convert transcript-level to gene-level dataset to use it in DESeq2 ?
DESeq2 Transcriptomics tximport deseq txi
updated 20 days ago by ★ 1.5k • written 22 days ago by • 0
0
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2
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770
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suggestions/comments on DESeq transcript wise analysis
convert DESeq convert DESeq
written 11.0 years ago by ▴ 190
12 results • Page 1 of 1
Recent ...
Replies
Comment: TCGA: clinical data and expression data by sharifnstu1203002m • 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user) by lalanis1 • 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma by Gordon Smyth 47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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