Bioconductor DNAstringset

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966

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dnastringset dnastringsetlist seqnames

6.2 years ago s.ghignone ▴ 10

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4.1k

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dnastringset list stringset

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by vinod.acear ▴ 50

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5.0k

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subseq Xvector dnastringset

updated 7.6 years ago by Hervé Pagès 16k • written 7.7 years ago by Sophie • 0

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1.0k

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dnastringset aastringset

7.9 years ago XIA.PAN ▴ 20

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6.3k

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DNAstringset

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by XIA.PAN ▴ 20

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dnastringset getseq

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by TimothéeFlutre ▴ 80

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pwmenrich dnastringset

updated 8.8 years ago by Robert Stojnic ▴ 50 • written 8.8 years ago by sekawaiwai2006 ▴ 20

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dnastringset parallel iterators

9.1 years ago ben.ward ▴ 30

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1.3k

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DNAStringSet sample

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by vinod.acear ▴ 50

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dnastringset

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by komal.rathi ▴ 120

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vcf testthat dnastringset

9.2 years ago TimothéeFlutre ▴ 80

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4.7k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.7 years ago dan.gatti • 0

12 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

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