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TCGA tcgabiolinks list reformat

4.4 years ago Guido Hooiveld ★ 3.2k

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2.7k

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dnastringset list stringset

updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by vinod.acear ▴ 50

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1.4k

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r iranges findoverlaps IntegerList List

5.8 years ago • updated 5.5 years ago jian_liangli • 0

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958

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coercion data manipulation s4vectors List

5.9 years ago Jurat Shahidin ▴ 70

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3.5k

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deseq2 heatmap clustering file list

updated 6.7 years ago by Michael Love 36k • written 6.7 years ago by chariko • 0

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2.2k

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org.mm.eg.db select list

updated 6.7 years ago by James W. MacDonald 59k • written 6.7 years ago by Assa Yeroslaviz ★ 1.5k

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580

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mirror preferred list

updated 7.0 years ago by Dan Tenenbaum ★ 8.2k • written 7.0 years ago by lejeczek ▴ 10

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763

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Piano List

updated 7.1 years ago by Leif Väremo ▴ 70 • written 7.1 years ago by nonCodingGene ▴ 10

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1.1k

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rle list irange grangeslist

updated 7.1 years ago by Chris Seidel ▴ 80 • written 7.1 years ago by gen ▴ 30

9 results • Page 1 of 1

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Comment: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…

Comment: UniprotKB AC/ID to Entrez ID Conversion by tom.kloter • 0

Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Guido Hooiveld ★ 3.2k

Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…

Answer: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Thanks sir! The normalization of SCAN not only log2 but also center to zero transformation. But in my opinion, the latter (center to 0) is …

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Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array

Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

A: coefficient not estimable (limma warning)

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Scholar to Guido Hooiveld ★ 3.2k

Scholar to Kevin Blighe 3.5k

Scholar to SamGG ▴ 270

Prophet to johnmcma ▴ 10