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how to reformat complex list object (derived with TCGAbiolinks)?
TCGA
tcgabiolinks
list
reformat
4.4 years ago
Guido Hooiveld
★ 3.2k
3
votes
4
replies
2.7k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
vinod.acear
▴ 50
1
vote
12
replies
1.4k
views
How can I integrate set of compressedList in multiple list into one without duplication?
r
iranges
findoverlaps
IntegerList
List
5.8 years ago • updated 5.5 years ago
jian_liangli
• 0
3
votes
5
replies
958
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion
data manipulation
s4vectors
List
5.9 years ago
Jurat Shahidin
▴ 70
2
votes
3
replies
3.5k
views
Deseq2. Cluster of an specific list
deseq2
heatmap
clustering
file
list
updated 6.7 years ago by
Michael Love
36k • written 6.7 years ago by
chariko
• 0
4
votes
2
replies
2.2k
views
select keys from org.Mm.eg.db
org.mm.eg.db
select
list
updated 6.7 years ago by
James W. MacDonald
59k • written 6.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
580
views
preferred mirrors list - permanently
mirror
preferred
list
updated 7.0 years ago by
Dan Tenenbaum
★ 8.2k • written 7.0 years ago by
lejeczek
▴ 10
0
votes
1
reply
763
views
Mixing list from Piano package output
Piano
List
updated 7.1 years ago by
Leif Väremo
▴ 70 • written 7.1 years ago by
nonCodingGene
▴ 10
2
votes
4
replies
1.1k
views
summing integer RLE
rle
list
irange
grangeslist
updated 7.1 years ago by
Chris Seidel
▴ 80 • written 7.1 years ago by
gen
▴ 30
9 results • Page
1 of 1
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Comment: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
tom.kloter
• 0
Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…
Answer: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! The normalization of SCAN not only log2 but also center to zero transformation. But in my opinion, the latter (center to 0) is …
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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