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DesignMatrix
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0
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Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
limma
DifferentialExpression
Designmatrix
14 months ago
Tadeoye
▴ 20
0
votes
1
reply
627
views
Deseq2 design matrix
DESeq2
Designmatrix
limma
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Neha
• 0
0
votes
3
replies
1.1k
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 22 months ago by
Gordon Smyth
53k • written 22 months ago by
prity6459
• 0
0
votes
1
reply
653
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 22 months ago by
Gordon Smyth
53k • written 22 months ago by
avery
• 0
3
votes
5
replies
1.8k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
aditya.m
▴ 10
4
votes
6
replies
2.0k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
3.2 years ago
Abdul
▴ 20
2
votes
4
replies
2.1k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 4.3 years ago by
Gordon Smyth
53k • written 4.4 years ago by
rebecca.lea.johnston
• 0
0
votes
3
replies
1.7k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 4.3 years ago by
swbarnes2
★ 1.4k • written 4.3 years ago by
OST
• 0
1
vote
2
replies
1.7k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 4.9 years ago by
Gordon Smyth
53k • written 4.9 years ago by
athief
▴ 20
1
vote
0
replies
1.0k
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
5.0 years ago
nageshprabhu.k
▴ 10
2
votes
4
replies
1.6k
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
5.0 years ago
Debayan
▴ 20
0
votes
2
replies
1.7k
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
5.0 years ago
sfidemw
• 0
0
votes
2
replies
1.3k
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
anshulmbi
• 0
0
votes
2
replies
1.4k
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
Beginner
▴ 60
2
votes
6
replies
1.8k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
Keifa
▴ 10
2
votes
4
replies
1.9k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 9.6 years ago by
Aaron Lun
★ 29k • written 9.6 years ago by
nashchem
• 0
16 results • Page
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Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
colinmccornack
• 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
by
Erik Wright
▴ 150
This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…
Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Votes
Answer: Can you colour dendrogram branch clusters in pheatmap?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
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